AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03619 ATGGAGGGCGTTGATGCTAACGATAAGTATGCTAAAGAATTAGAAGTAGGTGTTAGAGTTGTACAGCTTGCTTGTTGTCTATGCCAGAAGGTGCAAAAGGGTTCGATTGGTCCGACCCCTGATCAGGTCTTTTCCAAAGACGACGATTCACCTGTTACTGTCGCCGATTGGAGTGTACAAGCAATGATAAGTTGGATTCTCTCAGAATCATTCGGCAAACAAAATGTCTCAATTGTAGCTGAAGAAGACACACAAGCACTATCCGATTCAAACAGCACCAGTTTACTAGCCTCTGTGGTTGCAACCTTTAGCCATGGCACCCAGGTTCGGTCTCAAGGGTCCAACCACATCCTGGGGCCCACACAAGTTCTTGAAGCCATTAACCATTGCAATTCAACAGGTGGACCAATAGGAAAACATTGGGTCCTTGATCCTGTTGATGGAACATTAGGGTTTGTTCGTGGTGACCAGTATGCAGTGGCTCTTGCTTTGATTGAAAACGGGCAGGTTGTGGTCGGTGTTCTTGGCTGCCCAAATTATTCGAGTAAAAAAAAACTCGTGAACAATTCAAGTGTTTCAAAAGAAGGTTGTGTAATGTATGCAAGAAAAGGTAGTGGTGAAGCTTGGATGCAGCCATTGGCGTGTGAAGGTGGGACCCACGTGGTGTGGCCCAATTCGGCTACCCGAATTAGGGTTTCTTCCATTGATGATCCTTCAATGGCTACAAAGCAACCGTTGCGTGTTTATAGCATGGTGAAGTATGCAGCAATAGCGCGTGGGGATGCGGAGATATATATGAAGTTTGCAAAAGCTGGATATAAAGAGAAGATATGGGATCATGCTGCGGGGGTGGTGATAGTGGAAGAAGCTGGCGGTGTTGTGACGGATGCTGGTGGTCGGCCGCTGGATTTTTCAAGAGGGGTGTATCTTGAAGGGGTTGATCGGGGTATTGTTACTTGTTCAGGGGCGAATTTGCATGACAAAATTATTGGGGCTGTTTATGCAAGTTGGGAGTCTTCTCATTTATAA 1029 45.97 MEGVDANDKYAKELEVGVRVVQLACCLCQKVQKGSIGPTPDQVFSKDDDSPVTVADWSVQAMISWILSESFGKQNVSIVAEEDTQALSDSNSTSLLASVVATFSHGTQVRSQGSNHILGPTQVLEAINHCNSTGGPIGKHWVLDPVDGTLGFVRGDQYAVALALIENGQVVVGVLGCPNYSSKKKLVNNSSVSKEGCVMYARKGSGEAWMQPLACEGGTHVVWPNSATRIRVSSIDDPSMATKQPLRVYSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSRGVYLEGVDRGIVTCSGANLHDKIIGAVYASWESSHL 342
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03619 342 PRINTS Inositol monophosphatase superfamily signature 50 70 IPR000760 -
Lssa7g03619 342 PRINTS Inositol monophosphatase superfamily signature 275 299 IPR000760 -
Lssa7g03619 342 ProSitePatterns Inositol monophosphatase family signature 2. 278 292 IPR020550 GO:0046854(InterPro)
Lssa7g03619 342 SUPERFAMILY Carbohydrate phosphatase 10 336 - -
Lssa7g03619 342 PANTHER PHOSPHATASE 6 240 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Lssa7g03619 342 ProSitePatterns Inositol monophosphatase family signature 1. 141 154 IPR020583 -
Lssa7g03619 342 Pfam Inositol monophosphatase family 48 332 IPR000760 -
Lssa7g03619 342 CDD PAP-phosphatase 13 335 - -
Lssa7g03619 342 Gene3D - 9 218 - -
Lssa7g03619 342 Gene3D - 224 336 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03619 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:90946101 Lssa7g03619 Lssa-Chr7:191883444 dispersed
Lssa Lssa-Chr4:92682503 Lssa7g03619 Lssa-Chr7:191883444 dispersed
Lssa Lssa-Chr4:288201270 Lssa7g03619 Lssa-Chr7:191883444 dispersed