AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03630 ATGGGCTTCTCTCTTAAACTCGCCGTGGTTTCCGCCACTGTCTTGTCAACCGCTGTCATGCTAAAACTTGTAGCACCTGTCATTATGGAGCTGACAATCTCCGACCTTCCTTTCATATGGACCTCCGTCATCTCTTGGCTCAAACCGCCGTATCTTTACGTCGTCATCAACTGTATCATCATCACCATCGTTGCTTCTTCACGCTTACAGTCCAAGCTCGATGATTCTCCTTCTCCCTCGATGTCCTCAACTCTCCCTACTGCACTCCTACTCTCAACCGAGCCCGTCAAGGTTGAGCTACCCCCACTGGAACCACCGTTCCACGGTGGTCAATTGGCGAATGAACCCGTGAAGATCACCGCCGCTAGTTACGGCGATAGTCCGATGTTTGTTCAAGCTCCGGAACCGGTTGGTATTCCTGATCAGTTTACTGATGAATACAAGGATGAAGATATGAAGGTAGCAACCGAAGCTTATGAAGAAATCACAAATAATAAAATTAATAAGCATGTAATCTCGATGTCTTCCTGGACCCCGTCAAATATAAAACAAGTAGATCTCACTTTTCCGGTGGAGAAACCACCAGCTTCCGCCAGATTCAGCCACCGGAAACTTGCAAAAGGCAGCGCCGAAGGTGGACGGACGTTGGGAATTGCGAAGCCGAAGCGTCAGGACACATTGGAAACCACGTGGAAGACAATAACGGAGGGCCGGTCGGTGCCGTTGACGAGACACCTACGTAAATCTGACACGTGGGAGACACACCGCAACTCCGAGGACTCACCAATCGAGCATCACCCCGAAAGGATGACGAAGTCCGATACGTTTGACGTTAACCGCGGAGGTGGCAGTAGTAGGAAACCACCGCCTCTGCCGTCGAAGCTGAGTCGGTCGGGTGGGTCGGGGAGGCTGAGGAAGGATCCGTCGTTGGGGCAGGAGGAACTTAACCGGAAAGTGGAAGCGTTCATCAAGAAATTCAATGAGGATATGAGATTACAGAGACAAGAATCCTTGAATCAGTACATGGAGATGATCAATCGTGGGGCACATTAA 1053 50.33 MGFSLKLAVVSATVLSTAVMLKLVAPVIMELTISDLPFIWTSVISWLKPPYLYVVINCIIITIVASSRLQSKLDDSPSPSMSSTLPTALLLSTEPVKVELPPLEPPFHGGQLANEPVKITAASYGDSPMFVQAPEPVGIPDQFTDEYKDEDMKVATEAYEEITNNKINKHVISMSSWTPSNIKQVDLTFPVEKPPASARFSHRKLAKGSAEGGRTLGIAKPKRQDTLETTWKTITEGRSVPLTRHLRKSDTWETHRNSEDSPIEHHPERMTKSDTFDVNRGGGSSRKPPPLPSKLSRSGGSGRLRKDPSLGQEELNRKVEAFIKKFNEDMRLQRQESLNQYMEMINRGAH 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03630 350 PANTHER COTTON FIBER (DUF761) 24 348 - -
Lssa7g03630 350 Pfam Cotton fibre expressed protein 312 347 IPR008480 -
Lssa7g03630 350 MobiDBLite consensus disorder prediction 245 313 - -
Lssa7g03630 350 Pfam Domain of unknown function (DUF4408) 37 69 IPR025520 -
Lssa7g03630 350 MobiDBLite consensus disorder prediction 245 275 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03630 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:91660377 Lssa7g03630 Lssa-Chr7:191974493 dispersed
Lssa Lssa-Chr7:26588256 Lssa7g03630 Lssa-Chr7:191974493 wgd