AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03635 | ATGTTAGAAGGAAAAGCTGTGATCGGGGAGACTGATATGCTTCAAACCATGCAAGAAGACGCACTTCAACTCGCAGCTAAAGCACTCGACTTCTTTGATGTAACTGAAGCCACTGATATAGCCCGAGTGATTAAACAGGAATTCGACGCGATGTATGGCGGTGGTTGGCAGTGTATCGTAGGGACTGATTTTGGATCGTTTGTGACTCATTGTTATGGTTCTTTCATTCATTTTTCTATTGGGAGTCTTTCGATTTTGCTGTTTAGAGGATCAGCAGCACCAGAGATCGATAACTTTTCGACATTGGAGAGTGTAAAAGCATGA | 324 | 42.9 | MLEGKAVIGETDMLQTMQEDALQLAAKALDFFDVTEATDIARVIKQEFDAMYGGGWQCIVGTDFGSFVTHCYGSFIHFSIGSLSILLFRGSAAPEIDNFSTLESVKA | 107 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03635 | 107 | SMART | Dynein-light-2 | 1 | 90 | IPR001372 | GO:0007017(InterPro)|GO:0030286(InterPro) | |
| Lssa7g03635 | 107 | CDD | DLC-like-DYNLL1-DYNLL2 | 5 | 89 | - | - | |
| Lssa7g03635 | 107 | Gene3D | Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 2 | 90 | IPR037177 | GO:0007017(InterPro)|GO:0030286(InterPro) | |
| Lssa7g03635 | 107 | SUPERFAMILY | DLC | 1 | 90 | IPR037177 | GO:0007017(InterPro)|GO:0030286(InterPro) | |
| Lssa7g03635 | 107 | PANTHER | DYNEIN LIGHT CHAIN | 7 | 89 | IPR001372 | GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER) | |
| Lssa7g03635 | 107 | FunFam | Dynein light chain | 1 | 90 | - | - | |
| Lssa7g03635 | 107 | Pfam | Dynein light chain type 1 | 5 | 89 | IPR001372 | GO:0007017(InterPro)|GO:0030286(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03635 | K10418 | dynein light chain LC8-type |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr5:243791177 | Lssa7g03635 | Lssa-Chr7:192306591 | dispersed | |
| Lssa | Lssa-Chr7:192306591 | Lssa8g02176 | Lssa-Chr8:89335021 | transposed |