AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03649 ATGGCAAGCAAAAGATGTTTGTTTTTTATCATTTTGGCAACGATTGTTGTTTCATGTATGATTACACAAGTCAAAGCTTATACATCTAGTTACTGTAATCACGAGTCTCGTTGCCCCGGTCAATATATTTCATGCCCTTCTGAGTGCCCTGAAAGCAACTCCAACGACCCTAACACTAAAGTTTGTCGCATTGATTGCTATTCTCCAAAATGCAAGGCTCAATGCAAACATAACAAACCAGAGTGTGACACACCGGGATCTGCATGCTACGACCCACGGTTCATCGGAGGAGACAGCATCGTCTTCTACTTTCACGGCAAAGTCAACGAGCATTTCAGTTTGGTCTCCGATTCTAACCTCCAAATCAACGGACGATTCATCGGCCACCAACCCACCGGCAGATCCAGACCCTTCACCTGGATCCAAGCCTTGGGTCTCCTTTTCAACTCCCACAGTTTCTCCCTGGAAGCGACTAAATCTGCCACCTGGGATGGCAGAATCGACCACCTAAAATTCTCCTACGATGGAGAAGATGTTTCATTAGCTCTTGGTGGGTTATCGTCATGGAAGTCGCCAGAGGGTGAAATCGAAGTGGAGAGAACTTCTGAGGTGAACAGTGTGATGGTGAACATACCTGGAGTTGTGGAGATTTTGGTGAATGTGGTGCCGGTTACTGCTGAAGATGATAAGATCCATGGCTACAATGTACCTTCTGATGACTGTTTTGCTCATTTGGAAGTGCAGTTTAAGTTTACCGGACTTTCCGATGGAGTTGAAGGGGTTTTGGGAAGGACATATCAGCCGGATTTTAAGAATCCTGCAAAGCCAGGGGTTGCTATGGCGGTTGTTGGAGGAGAAGACAAGTATAGAACGACGTCTTTGTTGTCTTCCGATTGTGCAAACTGCATTTACGATTCCAGTAATGTTGCAGAGAAAGAGAATAATATGATTAAAGAGCATGAAACTTTGGATTGTTCTGCCAAGGGATTGTTCCGTGGAAATGGGATTGTTTGCAAGAAATGA 1023 44.87 MASKRCLFFIILATIVVSCMITQVKAYTSSYCNHESRCPGQYISCPSECPESNSNDPNTKVCRIDCYSPKCKAQCKHNKPECDTPGSACYDPRFIGGDSIVFYFHGKVNEHFSLVSDSNLQINGRFIGHQPTGRSRPFTWIQALGLLFNSHSFSLEATKSATWDGRIDHLKFSYDGEDVSLALGGLSSWKSPEGEIEVERTSEVNSVMVNIPGVVEILVNVVPVTAEDDKIHGYNVPSDDCFAHLEVQFKFTGLSDGVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYRTTSLLSSDCANCIYDSSNVAEKENNMIKEHETLDCSAKGLFRGNGIVCKK 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03649 340 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 26 340 - -
Lssa7g03649 340 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lssa7g03649 340 Pfam Root cap 248 304 IPR009646 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03649 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:192408395 Lssa7g03649 Lssa-Chr7:192547371 dispersed
Lssa Lssa-Chr7:192547371 Lssa8g00888 Lssa-Chr8:30984750 dispersed
Lssa Lssa-Chr7:192488886 Lssa7g03649 Lssa-Chr7:192547371 proximal
Lssa Lssa-Chr7:192547371 Lssa7g03650 Lssa-Chr7:192598397 tandem