AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03657 ATGCAACCCCAGAAAACCCTACCGGAATCCGACTTACCGTCGCTCGCCGCCATCAAAGTCAAGTCATCATCCCCTCGTTTCCGTCCTACCAATCATTCCGCCACCGAAACCCCCACTGCCGGCGCACAACGCAGGATAGGCATCGCTGTCGATCTTAGCGACGAGAGTGCCTTTGCTGTAAAGTGGGCCGTCCACCAGTATCTCCGCCCCGGTGACGCCGTCATCCTGATCCATGTCCGTCCTACTTCCGTCCTTTACGGCGCTGATTGGGGCTCCGTTGATCTCTCCATTGTCGACACTGACAATGAGGAATCACAGCAGAAGCTCGAAGATGATTTTGATACTTTCACCACTACGAAATCCGCTGCCCTAGCGCAACCTCTGGTCGACGCGCACATACCGTATAAGATCCATATCGTGAAAGATCATGACATGAAGGAGAGGCTTTGTTTGGAAGTTGAACGACTAGGGTTAAGTGCGGTTATCATGGGAAGCCGAGGATTCGGTGCAACAAAACGCGGAACCGATGGGAGGCTCGGGAGTGTTAGCGATTACTGTGTCCGTCACTGTGTGTGCCCGGTGGTGGTTGTGAGATATCCCGATGAGAAAGATCCCGCTGCTGCTGTTGAGCCGGTGGTGTCGGTTGCAACAGCCGATGATGAGGAAGATGACCCTGAATTCCATGATGCAACCGATGAACGAAAATTATGTTGTGTCTATTATCAGTTATTTAACTGGATCTATGTGACATAA 753 51.93 MQPQKTLPESDLPSLAAIKVKSSSPRFRPTNHSATETPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNEESQQKLEDDFDTFTTTKSAALAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGTDGRLGSVSDYCVRHCVCPVVVVRYPDEKDPAAAVEPVVSVATADDEEDDPEFHDATDERKLCCVYYQLFNWIYVT 250
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03657 250 PANTHER OS01G0783500 PROTEIN 7 235 IPR044162 -
Lssa7g03657 250 Gene3D HUPs 32 210 IPR014729 -
Lssa7g03657 250 CDD USP-Like 45 197 - -
Lssa7g03657 250 MobiDBLite consensus disorder prediction 23 42 - -
Lssa7g03657 250 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 203 - -
Lssa7g03657 250 PRINTS Universal stress protein signature 43 61 IPR006015 -
Lssa7g03657 250 PRINTS Universal stress protein signature 176 198 IPR006015 -
Lssa7g03657 250 Pfam Universal stress protein family 44 198 IPR006016 -
Lssa7g03657 250 MobiDBLite consensus disorder prediction 24 40 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03657 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:403701233 Lssa7g03657 Lssa-Chr7:192752593 transposed
Lssa Lssa-Chr9:35102429 Lssa7g03657 Lssa-Chr7:192752593 transposed
Lssa Lssa-Chr7:25139402 Lssa7g03657 Lssa-Chr7:192752593 wgd