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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03675 ATGGCGATTATACGGCAGAAGCACACACTACTTCTTCTACTACTATGTGTTATTCTTCCCTTTTCTCGATCGAAATCGGAACCGGAATCAGTAACGGAATCCTCCATTCACGATCTCCTCAAAAGCAAGGGCCTACCGGTTGGCCTGTTCCCGAAAGAAGTAGAATCCTTCACTCTTTACGACACAGGGCTCCTTGAAGTGTTCCTGAGAGGACCTTGTTTAACGAAATTCGATACCATGGCTTTCTACGAGAGCACTGTGAGAGCTAACCTTACTTACAGAAGCCTTACCGGCGTTGAAGGTCTCTCGCAGGAAGAGCTTTTCCTCTGGTTGCCGGTGAAAGATATCATCGTCGACGATCCGAAATCTGGGCTGATATTATTCGACATTGGCGTCGCTCATAAGCAGCTGTCTCTCTCACTCTTTGAAGATCCTCCTGATTGCAAATCCGAAGATTTTTTGAATTTGAAGAAGAAATCTAGAAAGGAGATAGGATTTGATGCTCAAATATAG 513 44.83 MAIIRQKHTLLLLLLCVILPFSRSKSEPESVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYRSLTGVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGVAHKQLSLSLFEDPPDCKSEDFLNLKKKSRKEIGFDAQI 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03675 170 Gene3D - 24 153 IPR036758 -
Lssa7g03675 170 FunFam Uncharacterized protein At3g07460 22 152 - -
Lssa7g03675 170 PANTHER T31J12.3 PROTEIN-RELATED 27 149 IPR007493 -
Lssa7g03675 170 SUPERFAMILY At5g01610-like 11 150 IPR036758 -
Lssa7g03675 170 Pfam Protein of unknown function, DUF538 36 143 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03675 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3933032 Lssa Lssa7g03675 Lssa-Chr7:194824243 Lssa9g00588 Lssa-Chr9:17217747
3948229 Lssa Lssa2g03255 Lssa-Chr2:196352352 Lssa7g03675 Lssa-Chr7:194824243
3963232 Lssa Lssa1g04231 Lssa-Chr1:222447010 Lssa7g03675 Lssa-Chr7:194824243