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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03681 ATGGACTCGGAACAAATTTTCAGCTACAGAACAACCGGTCAAACCTCATCATACCCACAAACTCCCCAAATCCCCACAAAACTAATCAATTCCCTAAAATTCGAATCAAGAAACTCCCCAAAATCCCCATTTTTAACACCTTTCGATTCAGAAACATTCACCGCATTAAGCGACAACAGCCCTTCTTCCGTTGAAGATTGCACCTCTTTTAACCACAGTGGCACTGCCTACATGAAAAATGCTCTTCACGATATAGAAACCACCCTAATGGCTCCAGATGATGACGTCACCATGCCCATGACCTGTATGGGTCAACCCGGATCCAATCTAAACAACTTGCTCATCGCATGTGCAAGTGCTTTAGCAAGCAACAATCCTGACGAATTTGAAAAATTAGTGGAACAAGCAAGGGCATTTGTGTCAATTAGCGGCGACCCAATTCAACGTTTAGGCGCGTATATAGTCGAAGGGTTGGTAGCAAGAAAGGAATGTTCAGGGAACAATATTTATCGGGCTTTAAGGTGTAAAGAACCCGAAGGTAAAGAATTACTTTCCTACATGCATATTTTATACGAAATTTGCCCGTATTTGAAATTCGGGTATATGGCTGCAAACGGGGCGATAGCCGAAGCAGTTAGAACCGAAGACCGTATCCACATCATTGACTTCCAAATAGCCCAAGGCACCCAATGGATGACCCTTTTACAAGCCCTAGCGGCCCGACCCGGTGGGCCCCCACACGTGCGTATCACCGGAATCGACGATCCCGTTTCCAGATACGCACGTGGTGATTCTTTGGAATTAGTCGGGAAACGGTTGGAATCGGTTTCACAAAAGTTCAAAATCCCGATCGAGTTTCATCCGATTCAAGTATTCGCACCGTTTGTGACTAAAGAAATGCTCGATGTGAGGCCAGGTGAGGCTCTCGCAGTCAACTTTGCCCTTCAATTGCATCACATGGCGGATGAGAGCGTTGACTTGTCAAACCCTAGAGACGAGAGGTTGAGAATGGTGAAATCTTTGAATCCGAAGGTTGTTACGTTAGTTGAACAAGAATCGAATACGAATACTGCAGCGTTCTTTCCAAGATTCTTGGAGGTTTTGGACTATTACACTGCGATGTTTGAAAGTATGGATGTGACGTTACCGATCGATAGGAAAAAGAGGATTAAGGTTGAACAACATTGTTTGGCGCGAGATATTGTGAATATTATTGCGTGTGAAGGTAAGGAAAGAGTGGAAAGACATGAGTTGTTTATGAAGTGGAGGTCGAGGTTTATGATGGCGGGATTTACGCAGTGTTCGTTGAGTCCGTATGTGAATTCGGTTATTAGGAATCTTTTGAAGCGTTATTCAGAGAATTATACGTTGGTTGAGAAAGATGGAGCTATGTTGTTGGGGTGGAAAGAGAGGAATCTTATTTCGGCATCTGCATGGCATTGA 1443 44.14 MDSEQIFSYRTTGQTSSYPQTPQIPTKLINSLKFESRNSPKSPFLTPFDSETFTALSDNSPSSVEDCTSFNHSGTAYMKNALHDIETTLMAPDDDVTMPMTCMGQPGSNLNNLLIACASALASNNPDEFEKLVEQARAFVSISGDPIQRLGAYIVEGLVARKECSGNNIYRALRCKEPEGKELLSYMHILYEICPYLKFGYMAANGAIAEAVRTEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSRYARGDSLELVGKRLESVSQKFKIPIEFHPIQVFAPFVTKEMLDVRPGEALAVNFALQLHHMADESVDLSNPRDERLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAMFESMDVTLPIDRKKRIKVEQHCLARDIVNIIACEGKERVERHELFMKWRSRFMMAGFTQCSLSPYVNSVIRNLLKRYSENYTLVEKDGAMLLGWKERNLISASAWH 480
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03681 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 479 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lssa7g03681 480 ProSiteProfiles GRAS family profile. 101 480 IPR005202 -
Lssa7g03681 480 MobiDBLite consensus disorder prediction 1 22 - -
Lssa7g03681 480 Pfam GRAS domain family 111 479 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03681 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3905722 Lssa Lssa1g00414 Lssa-Chr1:12198651 Lssa7g03681 Lssa-Chr7:195002699
3925561 Lssa Lssa5g03796 Lssa-Chr5:273681921 Lssa7g03681 Lssa-Chr7:195002699
3931959 Lssa Lssa7g02231 Lssa-Chr7:99098293 Lssa7g03681 Lssa-Chr7:195002699
3933036 Lssa Lssa7g03681 Lssa-Chr7:195002699 Lssa8g00291 Lssa-Chr8:9285500
3957227 Lssa Lssa7g03681 Lssa-Chr7:195002699 Lssa7g03993 Lssa-Chr7:209161023
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g01308 . 258 544 GRAS Transcription Factor family AT3G03450 25.497 2.67e-18 85.9
Lssa9g01310 ACH 107 515 GRAS Transcription Factor family AT5G17490 23.326 1.17e-17 83.6
Lssa9g01309 . 79 515 GRAS Transcription Factor family AT5G17490 23.696 8.13e-18 84.0
Lssa9g00290 . 26 66 GRAS Transcription Factor family AT1G66350 58.14 9.19e-09 48.9
Lssa9g00894 . 360 767 GRAS Transcription Factor family AT1G07530 53.431 2.51e-158 469.0
Lssa9g01307 . 242 584 GRAS Transcription Factor family AT5G66770 23.729 2.46e-17 83.2
Lssa9g00893 ACH 6 767 GRAS Transcription Factor family AT1G07530 46.015 0.0 613.0
Lssa8g01609 . 26 582 GRAS Transcription Factor family AT2G01570 63.715 0.0 702.0
Lssa8g00608 ACH 38 714 GRAS Transcription Factor family AT2G37650 43.983 0.0 529.0
Lssa8g00291 . 36 640 GRAS Transcription Factor family AT5G52510 46.614 1.46e-145 435.0
Lssa8g03061 . 73 714 GRAS Transcription Factor family AT2G37650 53.373 0.0 666.0
Lssa8g03658 ACH 157 516 GRAS Transcription Factor family AT5G17490 24.202 5.35e-21 94.4
Lssa8g04782 . 23 56 GRAS Transcription Factor family AT1G14920 73.529 1.54e-10 53.5
Lssa7g03681 . 19 489 GRAS Transcription Factor family AT5G48150 55.391 6.10e-180 511.0
Lssa7g03297 . 34 490 GRAS Transcription Factor family AT5G48150 60.991 0.0 565.0
Lssa7g03993 . 63 490 GRAS Transcription Factor family AT5G48150 65.668 0.0 580.0
Lssa7g00364 ACH 87 555 GRAS Transcription Factor family AT4G00150 49.468 5.52e-159 468.0
Lssa7g02231 . 8 409 GRAS Transcription Factor family AT3G49950 44.787 6.38e-118 348.0
Lssa6g00279 . 1 654 GRAS Transcription Factor family AT1G63100 49.565 0.0 565.0
Lssa6g00099 . 129 555 GRAS Transcription Factor family AT4G00150 44.989 2.22e-110 343.0
Lssa6g00278 . 1 654 GRAS Transcription Factor family AT1G63100 49.565 0.0 565.0
Lssa6g00670 . 86 547 GRAS Transcription Factor family AT3G03450 28.067 6.75e-49 176.0
Lssa6g00675 . 170 547 GRAS Transcription Factor family AT3G03450 29.487 2.75e-48 179.0
Lssa6g00674 . 170 546 GRAS Transcription Factor family AT3G03450 27.318 2.05e-49 176.0
Lssa5g03657 . 150 507 GRAS Transcription Factor family AT1G66350 28.76 3.60e-55 192.0
Lssa5g00003 . 41 444 GRAS Transcription Factor family AT1G55580 49.533 5.27e-126 372.0
Lssa5g03796 . 17 490 GRAS Transcription Factor family AT5G48150 60.208 0.0 570.0
Lssa5g03656 . 150 507 GRAS Transcription Factor family AT1G66350 28.571 2.57e-52 184.0
Lssa5g05384 ACH 20 754 GRAS Transcription Factor family AT1G07530 45.43 0.0 592.0
Lssa5g04882 . 73 713 GRAS Transcription Factor family AT2G37650 50.671 0.0 639.0
Lssa5g04820 . 242 651 GRAS Transcription Factor family AT3G54220 79.952 0.0 659.0
Lssa5g03096 . 27 529 GRAS Transcription Factor family AT1G14920 49.805 3.39e-167 483.0
Lssa4g00384 . 14 404 GRAS Transcription Factor family AT5G41920 66.995 0.0 525.0
Lssa4g06253 . 66 507 GRAS Transcription Factor family AT1G66350 38.661 5.89e-99 310.0
Lssa4g02194 . 1 526 GRAS Transcription Factor family AT4G17230 52.057 0.0 524.0
Lssa4g00512 . 44 582 GRAS Transcription Factor family AT2G01570 65.48 0.0 708.0
Lssa4g05192 ACH 37 484 GRAS Transcription Factor family AT4G36710 51.739 1.03e-140 412.0
Lssa3g02674 . 1 584 GRAS Transcription Factor family AT5G66770 57.596 0.0 585.0
Lssa3g02930 . 12 409 GRAS Transcription Factor family AT3G49950 60.766 0.0 514.0
Lssa3g02694 ACH 37 485 GRAS Transcription Factor family AT4G36710 50.647 3.79e-142 416.0
Lssa3g02894 ACH 2 530 GRAS Transcription Factor family AT4G37650 55.197 0.0 555.0
Lssa3g03918 . 141 530 GRAS Transcription Factor family AT4G37650 52.854 1.18e-139 408.0
Lssa3g04543 ACH 266 555 GRAS Transcription Factor family AT4G00150 55.973 2.54e-106 318.0
Lssa3g00037 . 92 555 GRAS Transcription Factor family AT4G00150 38.99 4.87e-93 294.0
Lssa3g01942 . 14 530 GRAS Transcription Factor family AT1G14920 56.722 0.0 578.0
Lssa2g03997 . 24 95 GRAS Transcription Factor family AT1G66350 50.0 6.74e-17 75.5
Lssa2g02169 . 23 529 GRAS Transcription Factor family AT1G14920 62.138 0.0 667.0
Lssa2g02245 . 429 493 GRAS Transcription Factor family AT2G01570 43.284 5.34e-14 67.0
Lssa2g03854 ACH 86 766 GRAS Transcription Factor family AT1G07530 44.913 0.0 555.0
Lssa2g00872 . 4 482 GRAS Transcription Factor family AT1G50420 63.883 0.0 605.0
Lssa2g04335 . 31 640 GRAS Transcription Factor family AT5G52510 43.499 6.23e-136 409.0
Lssa2g01440 . 197 439 GRAS Transcription Factor family AT3G50650 24.621 6.55e-12 65.9
Lssa2g02496 ACH 37 486 GRAS Transcription Factor family AT4G36710 51.613 2.42e-143 419.0
Lssa2g02619 ACH 40 530 GRAS Transcription Factor family AT4G37650 56.634 0.0 521.0
Lssa1g00414 . 18 593 GRAS Transcription Factor family AT1G21450 55.782 0.0 609.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lssa GRAS 6.8e-130 CL0063 TF GRAS