AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03686 | ATGATAGAAAATTTATTTGGATATAATGAGAAAAACAAAGGGAGCAACAGGAAGAGTTCATCACAAGATCCCTCTTCGAATATTATTCAAATTATTGATGGAAAGAAGGCCCAAAATTTGTCCATTCATCTAAAAGCAATTAATATTACAACAAATGAAGTTTGTGATGCACTTAAAGAAGGAAATGAGCTCCCAGTAGAGCTTATTCAAACATTGCTGAAAATGGCACCAAGTGTAGAAGAAGAAATGAAGTTAAGATTATATGATGGGGATTTATCTCGCCTTGGACCTGCAGAGAAGTTTCTAAAAAGATTAGTTGAAATTCCATTCGCTTTCAAAAGACTCGAAACTTTACTTTTTATGTGCACACTTCAAGAGGAACAAGATATCATCAAAGAATACTTCCAAACATTAGAGTCTGCTTGCAAAGAACTTAAAAAAAGCCGGTTGTTTTTAAAGCTTCTAGAAGCCGTTTTAAAAACCGGGAACCGTATGAATGATGGAACATTCCGTGGAAGCGCACAAGCATTCAAACTTGACACTTTGTTAAAACTTTCTGATGTTAAAGGAGTCGATGGAAAAACAACTCTTTTACATTTTGTAGTAGTTGAAATCATTAGGGCGGAAGGTATACGAGTAGCCAAAAGCGATGACCTTCTAGAAGAAGCCGCTAATTCTTCAAAAGACACGGACGAATACTATCGCAATCTTGGTCTCCAAGAGGTGTCAAGATTGTGTGGTGAGCTTGAAGATGTTAAGAAAGCCGCCACTATTGATTCAGATGGGTTGACTGGAACGGTTTCTAAATTTGGAAACGCGCTTGTAAAAGCGCGTGATTTTTTAGATACGGATTTGAAGAATTTACAAGAAAATAATAGTTATGATGATGATGAGGATGAGGATGAGGATGAGTTTCCCGGGATTTTGTCTGGATTTGTGCAAAGTGCAGAGAAGGATATTATGTGGATGCTTGAGGAAGAAAAGAGAATAATGGCACTTGTGAAAAAAACAGCCGATTATTTTCATGGACAAGCCGGGAAAGATGAAGGGTTGAGATTGTTTGTTATTGTTCGTGATTTTTTGATTATTTTGGATAAAGTTTGTAAAGAGATTAAAGAAACTCCTTTAAAGCCGCCACCTAAGCCCATACAGACAAAATTAGACGAGAAGAAAGATGGCTCGCCACGTAGGATGACAGAAGAGAAGAAAGATGGCTCGTCATGTAGGACGACAAAAGAGAAAAAAGATGGCTCGCCATGTACGACAACAGAAGAGAAAAAAGATGGTTCGCCAGGTAGGACGACAGAAGAAAAGAAAGATGGTTTACCACATAGGACGATAGAAGAGAAGAAGGATGGTTCGCCACGTAGGACGACAGAAGAGAAGAAGGATGGTTCGCCACGTAGGACGACAGAAGAGAAGAAAGATGGTTCGCCATGTAGAACTACAGAAGAGAAAAAAGATAGTTCACCAGGTAGGACGACAGAAGAGAAGAAAGATGGTTGGCCACATAGGACGACAGAAGAGAAGAAAGATGGTTGGCCACATAGGATGCCAGAAGAGACGAAAGATGTTTCGTCTCTAAGGACATGGGAAAATGATGATTTGCCGAGTCAGACTGGGGAAAGTGATGATTTGAAACGTGAGACACAAGAAGGTGAGGGTTTCCAAGATTCGTGGAAGAATGAGGATTTGGGGCATGAGAAGCTGGAAAATGAGGATCCACAAGAAGTTGATGATCTCCAAGATTCTTGGAGTGATGATAGTGTTGAACATGAAAAACATGAAAGTAGGGGTCCACTAGAAGTTGATGATCTCCAAAATTCTTGGAGAAATGAGAAACAGGAAAATAAGGATCCACAAGAAGTTGATAATCTCCAAGATTCTTGGAGAAATGAGGATCTAGGACATGAGAAACACGAAAATGAGGATCCACAAGAAGTTGATGATCTCCAAGATTCTTGGAGAATTGAGGATCTAGGACATGAGAAACAGGAAAATGTGGATCAACAAGAAGTTGATGATCTCCAAGATTATTCGAGAAATGAGAATCGAGGACATGAGAAACAGGAAAATGAGGAGTCACGACAAGTTGATGATCTCCAAAATTCTTGGAGAAATGAGGATCTGGGACATGAGAAACAAGAAAATGAGGATCCGCGAGAAGTTGATGATCTCCAAGATACTTGGAGAGATGAGGATCTAGGACATGAGAAACAGGAAAATGAGGATCCGCAAGAAGTTGATGATCTCCAAGATTCTTGGAGAAATAAGGATATGGGTGATGAGAAACAAGAAAATGCGGGACCACGAGAAGTTGGTGCTCTCCAAGATTCTTGGAAAAATGAGGATCCAAGACATGGGACACGAGAAAGTGAGGGTCCACAACAAGTTGATGGTCTCCAAGATTCTTGGAGAAATGGGGATCTTGGACATGTGCCACAAGAAGGTGAGAGTCCACAAGAAGTTGATGATCTCCAAGATTCTTGGAAAAATGAAGATCAAGAACATGAGACACAGGAAAGTGAGGATCCACCACGCAAAATAGAGGAAAATTATGATTTACTTCATGAGACACAGGAAATAAAATCACCATACAAGATCGAGGAAAGTGATGATTTAGGACATGAAGCATTGGAACATGATGATTCACAACATAAAACACATGATAATGATTCTGGTGATGATGATGATGATGATGCTTTACAAGCTACGGCACGGGAAGATGAAGATTTGGAGGTTAAGAAACAGGAACTTGATGATTCACAACATAAGACACATGATGATGGTGATGATGATGATGATTTACAATCTAATACCACATGGGAAGATGAAGATTTTGAGATTAAGATACAGGAACTTGATAATCCACAACTTATGACACTAGAAGATGATGAGATGGAACCTAAGCCACAGGAGAATGAGCACATGCAGCCTAAGACACTGGAAGATGAAGATTTGCAAAATGAGACACGGGAAACTGATGATTTGCAAAATGAGACACAAGAAACAAATGATTTGCAACCTGAGACTGAAAAGAAAGATGATTTTCCACCTTCAGAATTCCTCCAATCCGGTTTTCATGTTCCAAAAGAACGACTTATTCCTGCCATTGCATTGAGACGGGTGGATACTTTTGATTCAGACGAGAACTCAAGTTCAGATGACGACTAA | 3174 | 39.54 | MIENLFGYNEKNKGSNRKSSSQDPSSNIIQIIDGKKAQNLSIHLKAINITTNEVCDALKEGNELPVELIQTLLKMAPSVEEEMKLRLYDGDLSRLGPAEKFLKRLVEIPFAFKRLETLLFMCTLQEEQDIIKEYFQTLESACKELKKSRLFLKLLEAVLKTGNRMNDGTFRGSAQAFKLDTLLKLSDVKGVDGKTTLLHFVVVEIIRAEGIRVAKSDDLLEEAANSSKDTDEYYRNLGLQEVSRLCGELEDVKKAATIDSDGLTGTVSKFGNALVKARDFLDTDLKNLQENNSYDDDEDEDEDEFPGILSGFVQSAEKDIMWMLEEEKRIMALVKKTADYFHGQAGKDEGLRLFVIVRDFLIILDKVCKEIKETPLKPPPKPIQTKLDEKKDGSPRRMTEEKKDGSSCRTTKEKKDGSPCTTTEEKKDGSPGRTTEEKKDGLPHRTIEEKKDGSPRRTTEEKKDGSPRRTTEEKKDGSPCRTTEEKKDSSPGRTTEEKKDGWPHRTTEEKKDGWPHRMPEETKDVSSLRTWENDDLPSQTGESDDLKRETQEGEGFQDSWKNEDLGHEKLENEDPQEVDDLQDSWSDDSVEHEKHESRGPLEVDDLQNSWRNEKQENKDPQEVDNLQDSWRNEDLGHEKHENEDPQEVDDLQDSWRIEDLGHEKQENVDQQEVDDLQDYSRNENRGHEKQENEESRQVDDLQNSWRNEDLGHEKQENEDPREVDDLQDTWRDEDLGHEKQENEDPQEVDDLQDSWRNKDMGDEKQENAGPREVGALQDSWKNEDPRHGTRESEGPQQVDGLQDSWRNGDLGHVPQEGESPQEVDDLQDSWKNEDQEHETQESEDPPRKIEENYDLLHETQEIKSPYKIEESDDLGHEALEHDDSQHKTHDNDSGDDDDDDALQATAREDEDLEVKKQELDDSQHKTHDDGDDDDDLQSNTTWEDEDFEIKIQELDNPQLMTLEDDEMEPKPQENEHMQPKTLEDEDLQNETRETDDLQNETQETNDLQPETEKKDDFPPSEFLQSGFHVPKERLIPAIALRRVDTFDSDENSSSDDD | 1057 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03686 | 1057 | Coils | Coil | 987 | 1007 | - | - | |
| Lssa7g03686 | 1057 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1 | 390 | IPR015425 | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 907 | 932 | - | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 824 | 893 | - | - | |
| Lssa7g03686 | 1057 | PANTHER | FORMIN-RELATED | 1 | 1039 | IPR027643 | GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro) | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 540 | 574 | - | - | |
| Lssa7g03686 | 1057 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 27 | 375 | - | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 777 | 793 | - | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 585 | 769 | - | - | |
| Lssa7g03686 | 1057 | Pfam | Formin Homology 2 Domain | 2 | 363 | IPR015425 | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 383 | 530 | - | - | |
| Lssa7g03686 | 1057 | Coils | Coil | 684 | 704 | - | - | |
| Lssa7g03686 | 1057 | Gene3D | Formin, FH2 domain | 1 | 404 | IPR042201 | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 373 | 1033 | - | - | |
| Lssa7g03686 | 1057 | SMART | it6-source | 2 | 379 | IPR015425 | - | |
| Lssa7g03686 | 1057 | MobiDBLite | consensus disorder prediction | 963 | 999 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03686 | K28090 | formin |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 127177 | Lssa5g00185 | Lssa7g03686 | |
| 128133 | Lssa7g03686 | Lssa9g03459 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 3933040 | Lssa | Lssa7g03686 | Lssa-Chr7:195495991 | Lssa8g04540 | Lssa-Chr8:220648526 | |
| 3967519 | Lssa | Lssa5g00185 | Lssa-Chr5:10431539 | Lssa7g03686 | Lssa-Chr7:195495991 | |
| 3968901 | Lssa | Lssa7g03686 | Lssa-Chr7:195495991 | Lssa9g03459 | Lssa-Chr9:168434110 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lssa9g03459 | ACH | 422 | 900 | FH2 protein (formin) gene family | AT5G54650 | 63.8 | 0.0 | 608.0 | |
| Lssa9g00611 | ACH | 499 | 1026 | FH2 protein (formin) gene family | AT3G25500 | 61.993 | 0.0 | 612.0 | |
| Lssa9g04506 | . | 127 | 873 | FH2 protein (formin) gene family | AT3G05470 | 48.37 | 0.0 | 587.0 | |
| Lssa8g02319 | . | 712 | 1104 | FH2 protein (formin) gene family | AT2G25050 | 63.104 | 2.98e-154 | 484.0 | |
| Lssa8g02313 | . | 741 | 1104 | FH2 protein (formin) gene family | AT2G25050 | 58.108 | 4.44e-135 | 414.0 | |
| Lssa8g02798 | . | 659 | 887 | FH2 protein (formin) gene family | AT3G25500 | 56.332 | 2.35e-73 | 238.0 | |
| Lssa8g05616 | . | 271 | 382 | FH2 protein (formin) gene family | AT5G07780 | 42.857 | 3.83e-16 | 72.4 | |
| Lssa8g02315 | . | 712 | 1104 | FH2 protein (formin) gene family | AT2G25050 | 55.476 | 2.00e-135 | 432.0 | |
| Lssa8g02312 | ACH | 92 | 809 | FH2 protein (formin) gene family | AT5G07650 | 41.325 | 2.16e-170 | 518.0 | |
| Lssa8g02975 | . | 898 | 1023 | FH2 protein (formin) gene family | AT2G25050 | 53.175 | 3.08e-32 | 120.0 | |
| Lssa8g02314 | . | 901 | 1028 | FH2 protein (formin) gene family | AT2G25050 | 58.594 | 4.53e-41 | 144.0 | |
| Lssa8g00609 | . | 659 | 887 | FH2 protein (formin) gene family | AT3G25500 | 56.332 | 2.35e-73 | 238.0 | |
| Lssa8g05497 | ACH | 1 | 744 | FH2 protein (formin) gene family | AT1G70140 | 42.029 | 1.33e-163 | 488.0 | |
| Lssa8g04540 | ACH | 308 | 749 | FH2 protein (formin) gene family | AT4G15200 | 52.229 | 4.02e-150 | 454.0 | |
| Lssa8g02321 | ACH | 3 | 367 | FH2 protein (formin) gene family | AT2G25050 | 57.493 | 7.69e-147 | 466.0 | |
| Lssa7g03407 | . | 908 | 1011 | FH2 protein (formin) gene family | AT2G25050 | 63.462 | 1.02e-34 | 124.0 | |
| Lssa7g03687 | . | 154 | 357 | FH2 protein (formin) gene family | AT4G15200 | 32.051 | 9.09e-08 | 51.6 | |
| Lssa7g03686 | ACH | 475 | 875 | FH2 protein (formin) gene family | AT5G54650 | 59.353 | 1.52e-154 | 480.0 | |
| Lssa5g00660 | ACH | 1381 | 1641 | FH2 protein (formin) gene family | AT5G07740 | 68.321 | 8.89e-115 | 358.0 | |
| Lssa5g01652 | . | 818 | 1188 | FH2 protein (formin) gene family | AT1G31810 | 49.865 | 2.15e-102 | 346.0 | |
| Lssa5g00659 | . | 1215 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 71.332 | 0.0 | 637.0 | |
| Lssa5g01656 | . | 426 | 566 | FH2 protein (formin) gene family | AT5G07770 | 42.553 | 8.62e-30 | 112.0 | |
| Lssa5g00662 | . | 1215 | 1294 | FH2 protein (formin) gene family | AT5G07740 | 61.25 | 5.50e-27 | 106.0 | |
| Lssa5g01653 | . | 912 | 1061 | FH2 protein (formin) gene family | AT1G31810 | 49.333 | 3.50e-37 | 139.0 | |
| Lssa5g01646 | . | 816 | 861 | FH2 protein (formin) gene family | AT1G31810 | 60.87 | 2.71e-09 | 50.8 | |
| Lssa5g01743 | . | 944 | 1190 | FH2 protein (formin) gene family | AT1G31810 | 51.406 | 1.07e-74 | 245.0 | |
| Lssa5g05144 | . | 1523 | 1602 | FH2 protein (formin) gene family | AT5G07740 | 63.75 | 4.30e-29 | 106.0 | |
| Lssa5g05307 | . | 881 | 999 | FH2 protein (formin) gene family | AT2G25050 | 76.471 | 4.19e-52 | 183.0 | |
| Lssa5g00661 | . | 1327 | 1372 | FH2 protein (formin) gene family | AT5G07740 | 54.348 | 2.80e-11 | 60.5 | |
| Lssa5g05617 | ACH | 553 | 1026 | FH2 protein (formin) gene family | AT3G25500 | 73.013 | 0.0 | 689.0 | |
| Lssa5g00185 | ACH | 437 | 882 | FH2 protein (formin) gene family | AT5G54650 | 63.656 | 0.0 | 550.0 | |
| Lssa5g01657 | . | 1341 | 1490 | FH2 protein (formin) gene family | AT5G07740 | 41.333 | 2.86e-31 | 119.0 | |
| Lssa5g00663 | . | 1321 | 1641 | FH2 protein (formin) gene family | AT5G07740 | 66.044 | 1.19e-138 | 427.0 | |
| Lssa4g03804 | ACH | 1230 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 55.714 | 9.92e-136 | 432.0 | |
| Lssa4g02682 | . | 898 | 983 | FH2 protein (formin) gene family | AT2G25050 | 59.302 | 4.08e-23 | 91.3 | |
| Lssa4g03807 | . | 1228 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 78.708 | 0.0 | 695.0 | |
| Lssa4g03792 | . | 1 | 408 | FH2 protein (formin) gene family | AT5G07740 | 64.548 | 3.49e-171 | 535.0 | |
| Lssa4g05350 | . | 659 | 887 | FH2 protein (formin) gene family | AT3G25500 | 56.332 | 2.35e-73 | 238.0 | |
| Lssa4g03791 | . | 1 | 386 | FH2 protein (formin) gene family | AT5G07740 | 68.041 | 6.83e-169 | 538.0 | |
| Lssa4g05967 | . | 898 | 1000 | FH2 protein (formin) gene family | AT2G25050 | 56.311 | 1.50e-27 | 107.0 | |
| Lssa4g02407 | ACH | 316 | 742 | FH2 protein (formin) gene family | AT4G15200 | 56.828 | 1.16e-164 | 493.0 | |
| Lssa3g01752 | . | 12 | 760 | FH2 protein (formin) gene family | AT1G70140 | 45.477 | 0.0 | 567.0 | |
| Lssa3g00718 | . | 1 | 431 | FH2 protein (formin) gene family | AT1G31810 | 70.998 | 0.0 | 697.0 | |
| Lssa3g01558 | ACH | 435 | 856 | FH2 protein (formin) gene family | AT5G54650 | 59.434 | 2.34e-155 | 485.0 | |
| Lssa3g01753 | ACH | 142 | 754 | FH2 protein (formin) gene family | AT1G70140 | 44.961 | 2.20e-163 | 483.0 | |
| Lssa3g02905 | ACH | 417 | 884 | FH2 protein (formin) gene family | AT5G67470 | 66.255 | 0.0 | 608.0 | |
| Lssa2g02630 | ACH | 427 | 880 | FH2 protein (formin) gene family | AT5G67470 | 71.154 | 0.0 | 639.0 | |
| Lssa1g02726 | . | 581 | 1000 | FH2 protein (formin) gene family | AT3G25500 | 56.808 | 9.43e-151 | 465.0 | |
| Lssa1g04100 | . | 908 | 1011 | FH2 protein (formin) gene family | AT2G25050 | 60.0 | 1.07e-29 | 113.0 |