AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03688 ATGGCTAGCATGAAGCTTGAGGTTGTATCAGAAGACCAATCTCTACGTAAATGGTGTGTTCCTTTGAGAGAAGACATATTTGCTACATTTATGGCAAAAGGAAGTCCAATCATGCATAAGGTTTTTGGTGATAAATCATTGTTTGGACCATTATTGTTTACAAAATTCTTTGATCCATCGGATGCGTTTCCACTATGGGAATTTGAACCAGGTGTGTTGTTGTCTAATCTTCAGAACCCATGTGTGGATTGGCTTCAAACAGACTCATGTTATGTTCTTAAATCCGAACTACCAAAAATAGAAAAAAGCAGTGTTCGAATTTGTGTTGAGAATGGAAAGGTGATGGAGATTAGTGGGGTGTGGAAGAACAAAGGAGAATCATCAAGAACAGACTGGAGGAGTGGCGAATGGTGGGAGCATGGCTTTGTGCGGCGGTTGGAGTTGCCGGAAAATACAGACTGGAAGAAGACGGAGGCGTATGTGTATAATGATACAGTTTTGGACATTAGACTTCCGAAGACGCCATCAATGGAGTACTGTACTGAGGGTGTGATCAAAGAATCTTCATCTGGGTAG 576 41.49 MASMKLEVVSEDQSLRKWCVPLREDIFATFMAKGSPIMHKVFGDKSLFGPLLFTKFFDPSDAFPLWEFEPGVLLSNLQNPCVDWLQTDSCYVLKSELPKIEKSSVRICVENGKVMEISGVWKNKGESSRTDWRSGEWWEHGFVRRLELPENTDWKKTEAYVYNDTVLDIRLPKTPSMEYCTEGVIKESSSG 191
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03688 191 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 72 188 IPR002068 -
Lssa7g03688 191 Gene3D - 51 179 IPR008978 -
Lssa7g03688 191 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 3 177 - -
Lssa7g03688 191 SUPERFAMILY HSP20-like chaperones 56 176 IPR008978 -
Lssa7g03688 191 Pfam Hsp20-alpha crystallin family 83 177 IPR002068 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03688 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3957232 Lssa Lssa7g03688 Lssa-Chr7:195507452 Lssa5g05425 Lssa-Chr5:343232017