AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03761 ATGGATATTGAAATTGTTGGGCGCCATGCGCTCCTCTTCGACGATGATACCACGGCAGCCTTCGTCAACTCCCAAGACGCACTTGTTGACTGGAATTCTCTACTAATCGATCGTTACGACGTTCGCCACCTCCTTTTCAGCCCTCCACCATCTCGGAGGCGGCGTAATCCTCAAACCTCGCATTCAACTTCCGCTGATGCGGAAATCGATTATGAACGGTACCTGGATCTCCCCTCACCTTCCGAGGAAGAAGAAGCAGATCCAAAACCGGAACCTGTGGGTGGATTTAATGCTGTTCCTTTTTCTTATGGCAACAATGAGGAATCTAATGATCAAAAGAATGCTGAAGCTGAATCAGAAGTCCCTGCATTTCATCCCCCTTTCCCTGTTCCTGAAAGCCTGGTTCAGAATTTGGCACCATGTTCTCTTTTGATATCATGTGCAAGGGTCCGTGCAGGTGGGCCTCCTACAGAGAAAGTACATCAGATTATTTCAAGGACTGCTCTTTTTGTCAGCAAAAATGGAGGTCAATCAGAGATTGTTCTTAGAGTCAAACAAGGAGACAACCCAACTTTTGGGTTCTTAATGCCTGATCATCATCTACACCCTTACTTCAGGTTTCTGATCGATCACAAGGATCTCCTTCAGTCAAACGAAGAGAAAACATCAAATACAGAGAACCCCACTGGAGCTTTGTCTTTACTTGGTTCTGTATATGGTACTGGTGAAGATGATGAGAATGGAACAGAGCATCCATCATCATCACCATCTGGAAAAGACGATGTTGCCAGCTGGAAAACTAAAACAACCATATTGCCAGCTGGCAAAGACGAGCCTGTTTCAAAGCATTCACTAGATGATGCTCCTATTAGTAGAAAGAATTCTTTTCCAAATGCAGTGAAGGCTGTAAAAACTAGCATCATGAGAAAAGGTGAATCATCAACATCAAGTTCAGTCTCTGGTATTCGGGCTTCTTCTCTTCCTCCAGTTCCCAAAACTGAGCTCATGGTTATGGATCCTCCATCTGACATGAAAAAACTGGTTGAGAAGATTGTAGAATTCATCATCAAGAATGGGAGGCAGTTTGAAGGAGTACTTATGGAACAAGATCGTGGTCATGGAAGATTCCCTTTTCTAATCCCATCTAACATATTCCATCCATACTATCTAAAAGTTCTTCACACAGCTCACGAGTCGAAGTCAACTGTCAAGAGTTTCCACAATGAGAAAGGAAACGCTTCCCACAAGAAAATGTTGAACTCAAGGGATACGGAAGCTTCTTTAATGGAATCTGATGATATACCTCTTGATTCCGATAGAAAAGAGAAATTCAAAATGGTAATGAATAAGTCTAAAAAAGAAGCATCGGATCCTCCATCTAAACCCACACAAGAACAAAGTGTCCAGGTGAATGCTGCTCAAGCTGCAGCTATTCTTCAAGCTGCTACACGTGGCATCAAACATCCAAGTCTAGGGATCTTGAATGGAAAATTTGGTGGACAACAACAACAATCATCTTCTTCTAATGTAAATGAAACTGATTCCAATGAGCAAAAGTTAAAAGCTGAGAGACTAAAACGGGCTAAAATGTTTGTGGCAATGCTGAAAAGTGGGACCAACCCATCAAAAGCTGAACCCACACGTGGCTTATCAGCTGAGCCACAAGTAGTATCAATCGACAAAAAAATAAAATCAGAAAAGGAGCATTTGGATGATGAAAAACGTTCAAAGAGGAAATACAGAGATAGATCTAGCATACATAATGATATCGATGATGATGAGGGTGATGAGAGAGAAGAAAAAAGTTCACATAGACACCATAAGAAGAAGAAGCATAGATCTCATGAGAGTGAAGAAAGACATCGATCTCATCATAGTACTTCACATAAACATGATGACGTGGACAAAAACAATGAAAAAAAAGATCACAAAAGGAAAAAGAAGCATCGTTCTTCTAGTAGTTCAGATGATGAAGATGAACATTCTAGAAGAAAACATCGGTCTCACAAGTCTTCTTCTTCTCATAAACATAGGAAAAGTCGTTCTCATTCTTCTAGGCATAAACATAAGCATACTCATGATGATGGAAAGGCTTCAAATTCAGAAGAAGGGGAGATGAGTTCAAAAAGGGGACATGTGGTTGATAATGTCAGTAGAGAAGCTTCTGTTGATGTGTCAAGTTCTTCATATCAAGAACAAAAGCCACAGCCCTCTCAGATAACTGAGGTTCCTGATGATCTTAGAGCCAAAATCAGAGCAATGTTGATGTCTACAATGTAA 2280 41.05 MDIEIVGRHALLFDDDTTAAFVNSQDALVDWNSLLIDRYDVRHLLFSPPPSRRRRNPQTSHSTSADAEIDYERYLDLPSPSEEEEADPKPEPVGGFNAVPFSYGNNEESNDQKNAEAESEVPAFHPPFPVPESLVQNLAPCSLLISCARVRAGGPPTEKVHQIISRTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLIDHKDLLQSNEEKTSNTENPTGALSLLGSVYGTGEDDENGTEHPSSSPSGKDDVASWKTKTTILPAGKDEPVSKHSLDDAPISRKNSFPNAVKAVKTSIMRKGESSTSSSVSGIRASSLPPVPKTELMVMDPPSDMKKLVEKIVEFIIKNGRQFEGVLMEQDRGHGRFPFLIPSNIFHPYYLKVLHTAHESKSTVKSFHNEKGNASHKKMLNSRDTEASLMESDDIPLDSDRKEKFKMVMNKSKKEASDPPSKPTQEQSVQVNAAQAAAILQAATRGIKHPSLGILNGKFGGQQQQSSSSNVNETDSNEQKLKAERLKRAKMFVAMLKSGTNPSKAEPTRGLSAEPQVVSIDKKIKSEKEHLDDEKRSKRKYRDRSSIHNDIDDDEGDEREEKSSHRHHKKKKHRSHESEERHRSHHSTSHKHDDVDKNNEKKDHKRKKKHRSSSSSDDEDEHSRRKHRSHKSSSSHKHRKSRSHSSRHKHKHTHDDGKASNSEEGEMSSKRGHVVDNVSREASVDVSSSSYQEQKPQPSQITEVPDDLRAKIRAMLMSTM 759
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03761 759 MobiDBLite consensus disorder prediction 559 603 - -
Lssa7g03761 759 SUPERFAMILY Surp module (SWAP domain) 153 210 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 ProSiteProfiles SURP motif repeat profile. 163 205 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 MobiDBLite consensus disorder prediction 619 640 - -
Lssa7g03761 759 SUPERFAMILY Surp module (SWAP domain) 328 393 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 Gene3D Surp module 156 211 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 MobiDBLite consensus disorder prediction 46 114 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 496 515 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 537 746 - -
Lssa7g03761 759 Gene3D Surp module 333 402 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 2 743 IPR040397 GO:0000395(PANTHER)
Lssa7g03761 759 SMART DRY-EERY-2 1 107 IPR019147 -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 219 264 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 220 234 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 694 717 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 720 740 - -
Lssa7g03761 759 Pfam Surp module 346 393 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 Pfam Surp module 162 210 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 MobiDBLite consensus disorder prediction 651 665 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 666 693 - -
Lssa7g03761 759 ProSiteProfiles SURP motif repeat profile. 347 389 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 MobiDBLite consensus disorder prediction 66 90 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 604 618 - -
Lssa7g03761 759 Coils Coil 563 583 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 270 289 - -
Lssa7g03761 759 SMART surpneu2 161 214 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 SMART surpneu2 345 398 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Lssa7g03761 759 MobiDBLite consensus disorder prediction 406 469 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 406 459 - -
Lssa7g03761 759 MobiDBLite consensus disorder prediction 493 519 - -
Lssa7g03761 759 Pfam Alternative splicing regulator 2 121 IPR019147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03761 - -