AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03770 ATGAATAGTAATCCAGCTACGCCGATGAACGCAAACGCTCCGTCGTCAAGCTCCGGTGGCGCTGGATCCCCTGATTCAACTGCTCCAAGGAGAAATTCGAAACGACCTAAATATTCTAGGTTTACACAGCAGGAACTTCCAGCATGCAAGCCAATTCTTACTCCAAAATGGGTGATTTCAGCTTTCATGCTTGTAACCATTGTCTTCATACCAATAGGACTTGCTTCCCTCTTTGCTTCTCGTGATGTAGTTGAAATCATTGACCGATACGATAATGCCTGCGTACAAGGGTCAAAAAGTCAAAAGGTCCAATATATACAATCCAATGCAAGTAAGACCTGCACGAGAACCTTGACAGTCACAAAGCGTATGAAGCAGCCTATATACGTGTACTACCAACTCGACAATTACTACCAGAATCATCGGAGGTATGTGAAGAGCCGAAGTGATCAGCAATTAAGAAACCGTGGTGATGAAAATGACACAAGTTCATGTAAGCCCGAACATAATGCAAATGGGATGCCAATTGTGCCATGTGGGCTTGTAGCATGGAGTTTATTCAATGACACATATGCATTCTCCATCAGCAACAACCAATCATTACCCGTAAACAAGAGACATATTTCATGGAAAAGTGACAGAGAGGACAAATTTGGCAGTGATGTTTTCCCAAAAAACTTCCAAAATGGAAGTCTCATTGGTGGTGCACATCTCAACGAGTCCATACCATTAAGTGAGCAGGAAGACCTTATTGTGTGGATGAGAACTGCAGCTCTCCCAACTTTTAGAAAATTGTATGGAAAAATAGAAGTGGATATTCAAGCAGGAGAAACTATAACTGTTGTATTAGAGAACAACTACAACACTTATAGTTTTAGTGGCAAGAAGAAACTTGTGCTTTCAACCACAAGTTGGCTTGGAGGAAAGAATAACTTTATTGGCATCGCGTATCTTGCTGTTGGTGGATTATGCTTCATACTAGCTACAACTTTCACCCTCATATATTTAGTTAAACCAAGGCATCTTGGAGATCCGAATTATTTGTCATGGAACAGAAACCCAGGTGGTCATTGA 1074 41.34 MNSNPATPMNANAPSSSSGGAGSPDSTAPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIDRYDNACVQGSKSQKVQYIQSNASKTCTRTLTVTKRMKQPIYVYYQLDNYYQNHRRYVKSRSDQQLRNRGDENDTSSCKPEHNANGMPIVPCGLVAWSLFNDTYAFSISNNQSLPVNKRHISWKSDREDKFGSDVFPKNFQNGSLIGGAHLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDIQAGETITVVLENNYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFILATTFTLIYLVKPRHLGDPNYLSWNRNPGGH 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03770 357 MobiDBLite consensus disorder prediction 147 169 - -
Lssa7g03770 357 PIRSF Lem3-Cdc50 7 353 IPR005045 GO:0016020(InterPro)
Lssa7g03770 357 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 77 340 IPR005045 GO:0016020(InterPro)
Lssa7g03770 357 MobiDBLite consensus disorder prediction 147 165 - -
Lssa7g03770 357 MobiDBLite consensus disorder prediction 1 29 - -
Lssa7g03770 357 PANTHER CELL CYCLE CONTROL PROTEIN 50 29 349 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Lssa7g03770 357 MobiDBLite consensus disorder prediction 1 40 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03770 K26935 cell cycle control protein 50
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:117199184 Lssa7g03770 Lssa-Chr7:198590181 dispersed
Lssa Lssa-Chr7:198590181 Lssa8g05485 Lssa-Chr8:313757406 dispersed