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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03773 ATGGTAGCTGTTAAGGGTTTAAACACATTCAAGAGTAGGGTTTCTGGAGAACTCGAGACCAGGAAGAGTGTAATAGGTGGAGTCAGAAGCTTCAAGGTGTATACAGAAAATGAAAAGGTTAAGGTTCATAGCCGGGATCATGTTGCTGCTGAAACTACAAGGAAGTCTATGCCAGTCAAAGCCGAAACGAGTCAAATTCAAGCCACTTGTCTAAAGGGCGCTCTTAACAAATTGGACAAGATTCATGGAAAAAACATTAACTCTACTCAAGGTAAAGTAGCAAGAAAAGTGCTGGGAGATATCAGCAATTCTCAGGGTAATCTTCAAAAGAATGAAGCTTTTAATGGCTCCAAATCTGGAAAAGTTAAAATGGAAAAGGTGGCATATTTACAACGGGCTTCAATTGCTACAAAATCAAGGAATGCGAGTTCTTTATCAGGCAAACTTTCAATGGGAACACGTGTTGGAAGCCAGAGTGAAGCTGTTGAAGGTCGTGTTACACAGGGTAGAGTTGGCACCAAGGATTCAAAGGTCTTTGATGTTAATACAAGAACAAGGCTACAAAGTAAAGAAGCTGTTGGTTATGTTACAAGGGAATCTACTAGGAACTATCGCCCACCACAAAGGAAATCTTTTCCAGTTCTAAAGCATGTTGAGAAGACAGATACATGTGACATCAAGAAAGGAAACTTGGGAAATAAAGCAAAGAACAAGGATAAATTTGGATTCTCTGTTAAACCTAAAGTGGGGACAACAGTTGTACCACAAGTAAGCAATGGTAGGGACCACCGTTTGAAGAATAGAGTTAGTGATGGATCTATAAATATGGTGTCAGAAGATCGGTCAACAGGGAATACGAAGAGATTATCTAGGAGGTCAATGAAGCCAACAGTGAAAACTACAATTGGCATTCCTAAAGTATCAAGAAGGACCACTGTTTTTACCAAACCAACATCTTCAACTCTTGTTTTATTCAAGAAAAAGGAAGAAACATCCGCAACTTGTGTTTTATCAAAGAAAAATGAGGAAACATCAAATCCAACTGCTAATAATGGGAAATCTAGACGTCGAAAATCATACACATCTTTGCTAATCGAAGGATCAAAGATGCTAAAGGATCTTGCCAGTGTCACCAAGGAGGAGATTTTGCCAAGTATATATGATGATCGCAATCAACTTGAAGTTTCTGAATATGTTGATGAGATTTATCAGCATTATTGGGTTACCGAAGCACATCATCAGTCACTGAAGAATTACATGGAGATCCAAACAGACATCACGCCTCAAATGCGGGGGATTCTCATAAATTGGCTCATAGAAGTACATTTGAAATTTGATTTGATGCAAGAGACACTTTATTTGATGGTGACACTGTTAGACTATTATTTGTCCGTTGTTAATATTAAGAAAAATGAAATGCAATTAGTTGGTCTCACATCACTCTTGTTAGCATCCAAATATGAAGATTTTTGGCATCCAAAGGTTATGGAATTAATTAGCATCTCAGCAGAGTTATACACGAGAGATCAAATGCTCAAAATGGAGACAACAATTTTACATAAGCTCAACTTTCGTCTTAATTTGCCTACACCGTATGTTTTCATGCTGAGATTTCTTAGAGCTGCTCATGGAAGCAAAGAGTTTGAAAACCTAGCATTCTTCCTGATCGAGCTATCTTTGGTGGAATATGATGCTTTACATTTCAAGCCATCATTGCTATGTGCATCAGCTATTTATGTTGCTAGATGTACTCTCCATTTGGCCCCACCATGGACCCCACTTCTATCCAAGCATTCTCACTATCAAGAACATCAAATTAGAGATTGTGCGGAAATGATCTTGAGATTTCACCAAAGTGCAAGAAAAGCCGTGCTAAAAGTTACATTTGACAAATACATGAGCGATCATAACTACAAAGTTGCAAGTATCAGACCTCTCAACAGGCTTCCATCTTCTTGA 1959 38.39 MVAVKGLNTFKSRVSGELETRKSVIGGVRSFKVYTENEKVKVHSRDHVAAETTRKSMPVKAETSQIQATCLKGALNKLDKIHGKNINSTQGKVARKVLGDISNSQGNLQKNEAFNGSKSGKVKMEKVAYLQRASIATKSRNASSLSGKLSMGTRVGSQSEAVEGRVTQGRVGTKDSKVFDVNTRTRLQSKEAVGYVTRESTRNYRPPQRKSFPVLKHVEKTDTCDIKKGNLGNKAKNKDKFGFSVKPKVGTTVVPQVSNGRDHRLKNRVSDGSINMVSEDRSTGNTKRLSRRSMKPTVKTTIGIPKVSRRTTVFTKPTSSTLVLFKKKEETSATCVLSKKNEETSNPTANNGKSRRRKSYTSLLIEGSKMLKDLASVTKEEILPSIYDDRNQLEVSEYVDEIYQHYWVTEAHHQSLKNYMEIQTDITPQMRGILINWLIEVHLKFDLMQETLYLMVTLLDYYLSVVNIKKNEMQLVGLTSLLLASKYEDFWHPKVMELISISAELYTRDQMLKMETTILHKLNFRLNLPTPYVFMLRFLRAAHGSKEFENLAFFLIELSLVEYDALHFKPSLLCASAIYVARCTLHLAPPWTPLLSKHSHYQEHQIRDCAEMILRFHQSARKAVLKVTFDKYMSDHNYKVASIRPLNRLPSS 652
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03773 652 SUPERFAMILY Cyclin-like 391 527 IPR036915 -
Lssa7g03773 652 CDD CYCLIN-CCNB1-like-rpt1 395 524 - -
Lssa7g03773 652 SMART Cyclin-C-2 529 646 IPR004367 -
Lssa7g03773 652 Pfam Cyclin, N-terminal domain 401 527 IPR006671 -
Lssa7g03773 652 PANTHER CYCLINS 384 632 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lssa7g03773 652 MobiDBLite consensus disorder prediction 337 357 - -
Lssa7g03773 652 SUPERFAMILY Cyclin-like 529 648 IPR036915 -
Lssa7g03773 652 Gene3D - 521 650 - -
Lssa7g03773 652 MobiDBLite consensus disorder prediction 141 169 - -
Lssa7g03773 652 FunFam Cyclin N-terminal domain containing 2 416 524 - -
Lssa7g03773 652 MobiDBLite consensus disorder prediction 141 164 - -
Lssa7g03773 652 MobiDBLite consensus disorder prediction 275 297 - -
Lssa7g03773 652 Pfam Cyclin, C-terminal domain 529 645 IPR004367 -
Lssa7g03773 652 Gene3D - 415 520 - -
Lssa7g03773 652 FunFam putative cyclin-B3-1 isoform X3 525 650 - -
Lssa7g03773 652 SMART cyclin-7 436 520 IPR013763 -
Lssa7g03773 652 SMART cyclin-7 533 615 IPR013763 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03773 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr6:169594234 Lssa7g03773 Lssa-Chr7:198616044 dispersed
Lssa Lssa-Chr7:19877880 Lssa7g03773 Lssa-Chr7:198616044 dispersed
Lssa Lssa-Chr7:198616044 Lssa8g05101 Lssa-Chr8:274328876 dispersed
Lssa Lssa-Chr7:198616044 Lssa3g02427 Lssa-Chr3:100192670 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g00540 . 139 267 Core Cell Cycle gene family AT5G67260 35.099 1.58e-23 94.0
Lssa9g04372 . 12 345 Core Cell Cycle gene family AT1G18040 33.526 3.67e-52 177.0
Lssa9g01678 . 1 479 Core Cell Cycle gene family AT5G10270 77.126 0.0 743.0
Lssa9g00027 . 6 391 Core Cell Cycle gene family AT1G18040 60.644 6.55e-152 434.0
Lssa9g04380 . 18 361 Core Cell Cycle gene family AT5G10270 52.161 2.68e-116 357.0
Lssa9g01184 . 18 132 Core Cell Cycle gene family AT5G10270 36.522 6.03e-17 79.0
Lssa9g02821 ACH 2 296 Core Cell Cycle gene family AT5G65420 43.26 2.82e-73 227.0
Lssa8g01655 . 113 249 Core Cell Cycle gene family AT5G63610 65.823 8.67e-69 214.0
Lssa8g03219 ACH 1 222 Core Cell Cycle gene family AT5G48820 43.983 3.99e-47 154.0
Lssa8g05101 . 470 492 Core Cell Cycle gene family AT1G16330 78.261 2.21e-08 49.3
Lssa8g02042 . 7 499 Core Cell Cycle gene family AT1G02970 56.522 0.0 551.0
Lssa8g00900 ACH 20 306 Core Cell Cycle gene family AT1G20930 30.063 1.77e-28 115.0
Lssa8g01428 . 8 302 Core Cell Cycle gene family AT3G54180 25.882 3.13e-13 68.9
Lssa8g01008 . 11 315 Core Cell Cycle gene family AT1G20930 85.574 0.0 553.0
Lssa8g01009 . 11 315 Core Cell Cycle gene family AT1G20930 86.557 0.0 562.0
Lssa8g02478 . 1 297 Core Cell Cycle gene family AT5G27620 60.87 1.15e-133 380.0
Lssa8g05164 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 1.28e-95 304.0
Lssa7g02994 . 91 195 Core Cell Cycle gene family AT1G49620 46.491 1.66e-24 94.0
Lssa7g01456 . 39 154 Core Cell Cycle gene family AT2G38620 71.552 6.12e-54 167.0
Lssa7g02947 ACH 14 286 Core Cell Cycle gene family AT4G34160 53.584 7.03e-100 299.0
Lssa7g00546 . 106 377 Core Cell Cycle gene family AT3G11520 47.405 1.13e-72 228.0
Lssa7g03065 . 124 303 Core Cell Cycle gene family AT1G76540 33.0 7.55e-21 87.0
Lssa7g03773 . 10 647 Core Cell Cycle gene family AT1G16330 42.537 8.49e-152 452.0
Lssa7g02995 ACH 91 195 Core Cell Cycle gene family AT1G49620 48.246 2.33e-25 96.3
Lssa7g03586 . 18 376 Core Cell Cycle gene family AT5G10270 51.944 4.68e-120 366.0
Lssa7g03654 . 1 255 Core Cell Cycle gene family AT4G03270 31.418 2.41e-26 105.0
Lssa7g00930 . 10 290 Core Cell Cycle gene family AT3G48750 29.31 4.43e-41 144.0
Lssa7g00222 . 20 307 Core Cell Cycle gene family AT1G76540 32.069 6.77e-46 159.0
Lssa7g01506 . 1 478 Core Cell Cycle gene family AT4G28980 53.814 2.50e-176 501.0
Lssa7g02556 . 21 469 Core Cell Cycle gene family AT5G10270 42.766 1.43e-111 342.0
Lssa6g01479 . 1 80 Core Cell Cycle gene family AT2G27970 88.75 1.73e-52 156.0
Lssa6g03238 . 1 459 Core Cell Cycle gene family AT1G44110 59.167 0.0 550.0
Lssa6g03663 . 7 316 Core Cell Cycle gene family AT4G37630 34.796 1.10e-42 147.0
Lssa6g00432 . 3 301 Core Cell Cycle gene family AT3G54180 28.116 6.99e-29 113.0
Lssa6g00455 . 1 434 Core Cell Cycle gene family AT5G25380 51.193 9.54e-148 427.0
Lssa6g00571 . 1 290 Core Cell Cycle gene family AT3G48750 37.415 5.35e-67 215.0
Lssa6g03501 ACH 42 300 Core Cell Cycle gene family AT5G65420 47.566 4.97e-78 239.0
Lssa6g02027 ACH 1 220 Core Cell Cycle gene family AT5G48820 40.517 1.04e-41 139.0
Lssa5g01771 . 1 290 Core Cell Cycle gene family AT3G48750 37.966 4.46e-68 217.0
Lssa5g01112 . 1 289 Core Cell Cycle gene family AT3G48750 41.924 1.28e-75 231.0
Lssa5g03240 . 18 143 Core Cell Cycle gene family AT5G10270 34.921 1.17e-17 84.0
Lssa5g04812 . 210 309 Core Cell Cycle gene family AT3G54180 81.0 5.93e-59 183.0
Lssa5g05842 . 18 59 Core Cell Cycle gene family AT5G64960 52.381 1.82e-08 54.7
Lssa5g03530 . 28 362 Core Cell Cycle gene family AT1G47230 45.506 1.59e-103 308.0
Lssa5g05232 . 1 288 Core Cell Cycle gene family AT3G48750 34.948 2.08e-58 192.0
Lssa5g04926 . 1 435 Core Cell Cycle gene family AT5G06150 53.007 2.60e-153 440.0
Lssa5g04813 . 2 143 Core Cell Cycle gene family AT2G38620 75.352 3.96e-71 212.0
Lssa5g00354 . 18 357 Core Cell Cycle gene family AT5G10270 51.32 4.97e-115 349.0
Lssa5g01506 . 18 368 Core Cell Cycle gene family AT5G10270 47.244 1.36e-112 344.0
Lssa5g03489 . 52 308 Core Cell Cycle gene family AT1G70210 42.308 9.93e-59 190.0
Lssa5g00664 . 18 365 Core Cell Cycle gene family AT5G10270 45.658 7.38e-102 318.0
Lssa5g05696 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.553 6.88e-45 147.0
Lssa5g01964 . 76 181 Core Cell Cycle gene family AT5G27620 26.772 3.48e-06 47.0
Lssa5g03561 ACH 62 367 Core Cell Cycle gene family AT5G67260 48.265 1.04e-97 293.0
Lssa5g03605 ACH 91 195 Core Cell Cycle gene family AT1G49620 44.068 6.32e-24 92.0
Lssa5g02002 . 1 504 Core Cell Cycle gene family AT5G10270 73.359 0.0 700.0
Lssa5g05666 . 99 239 Core Cell Cycle gene family AT5G27620 28.667 1.45e-10 58.5
Lssa5g04789 . 2 309 Core Cell Cycle gene family AT3G54180 82.792 0.0 534.0
Lssa5g03252 . 20 312 Core Cell Cycle gene family AT1G76540 33.224 2.49e-52 176.0
Lssa5g04903 . 2 259 Core Cell Cycle gene family AT5G02110 27.517 1.59e-26 107.0
Lssa5g05989 . 18 132 Core Cell Cycle gene family AT5G10270 36.522 6.32e-17 78.6
Lssa5g02144 . 18 458 Core Cell Cycle gene family AT5G63610 71.778 0.0 644.0
Lssa4g02716 . 132 163 Core Cell Cycle gene family AT1G73690 87.5 2.93e-10 60.8
Lssa4g04388 . 18 288 Core Cell Cycle gene family AT4G34160 47.619 2.00e-82 253.0
Lssa4g04727 . 19 346 Core Cell Cycle gene family AT5G10270 46.505 2.21e-93 294.0
Lssa4g03622 . 19 459 Core Cell Cycle gene family AT1G80370 52.55 1.32e-148 429.0
Lssa4g05700 . 18 357 Core Cell Cycle gene family AT5G10270 43.989 1.42e-99 311.0
Lssa4g05542 . 1 365 Core Cell Cycle gene family AT5G67260 42.932 2.95e-99 297.0
Lssa4g02426 . 1 299 Core Cell Cycle gene family AT4G03270 40.575 1.53e-65 206.0
Lssa4g00681 . 18 140 Core Cell Cycle gene family AT5G10270 36.585 6.84e-19 84.7
Lssa4g01270 . 1 294 Core Cell Cycle gene family AT3G48750 85.333 0.0 535.0
Lssa4g05615 ACH 177 222 Core Cell Cycle gene family AT5G48820 58.696 2.42e-16 72.8
Lssa4g04189 . 145 288 Core Cell Cycle gene family AT5G63610 77.083 6.82e-79 241.0
Lssa4g00278 . 12 339 Core Cell Cycle gene family AT1G70210 62.349 1.08e-130 374.0
Lssa4g02793 . 3 289 Core Cell Cycle gene family AT3G48750 47.138 1.81e-89 276.0
Lssa4g00830 . 200 399 Core Cell Cycle gene family AT5G06150 30.049 1.01e-22 99.8
Lssa4g04418 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.065 2.80e-144 411.0
Lssa4g04386 . 5 397 Core Cell Cycle gene family AT1G73690 75.0 0.0 595.0
Lssa4g02901 . 18 357 Core Cell Cycle gene family AT5G10270 52.493 4.36e-117 355.0
Lssa4g02318 . 18 368 Core Cell Cycle gene family AT5G10270 50.852 1.11e-115 355.0
Lssa4g05461 ACH 16 306 Core Cell Cycle gene family AT1G20930 28.528 9.23e-37 135.0
Lssa4g02745 . 19 304 Core Cell Cycle gene family AT1G76540 25.449 8.60e-27 107.0
Lssa3g04679 . 20 312 Core Cell Cycle gene family AT1G76540 35.593 1.25e-56 188.0
Lssa3g00825 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 1.43e-116 353.0
Lssa3g04056 . 99 239 Core Cell Cycle gene family AT5G27620 28.0 7.30e-12 62.4
Lssa3g03243 . 107 356 Core Cell Cycle gene family AT5G10270 48.4 2.77e-86 265.0
Lssa3g02427 ACH 22 429 Core Cell Cycle gene family AT1G20610 55.769 2.83e-153 439.0
Lssa3g03021 . 153 195 Core Cell Cycle gene family AT1G49620 65.116 7.66e-16 69.3
Lssa3g04704 . 1 293 Core Cell Cycle gene family AT3G48750 74.744 1.95e-167 464.0
Lssa3g01137 . 20 982 Core Cell Cycle gene family AT3G12280 64.819 0.0 1261.0
Lssa3g04128 . 27 433 Core Cell Cycle gene family AT5G06150 53.155 5.75e-144 415.0
Lssa3g01360 . 18 383 Core Cell Cycle gene family AT5G10270 49.189 2.35e-116 353.0
Lssa3g00860 . 1 427 Core Cell Cycle gene family AT5G25380 48.673 2.09e-133 389.0
Lssa3g03242 . 32 357 Core Cell Cycle gene family AT5G10270 46.789 3.35e-104 318.0
Lssa3g02963 . 3 360 Core Cell Cycle gene family AT5G67260 44.262 1.50e-94 285.0
Lssa2g04281 . 124 219 Core Cell Cycle gene family AT3G50070 43.434 1.13e-18 78.6
Lssa2g02627 . 7 322 Core Cell Cycle gene family AT4G37630 33.714 2.95e-42 147.0
Lssa2g02649 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 3.95e-43 152.0
Lssa2g00153 . 1 430 Core Cell Cycle gene family AT1G76310 57.174 2.22e-171 486.0
Lssa2g00159 . 329 423 Core Cell Cycle gene family AT2G17620 57.292 4.73e-38 130.0
Lssa2g02723 ACH 150 195 Core Cell Cycle gene family AT1G49620 65.217 6.63e-16 70.9
Lssa2g00167 . 103 328 Core Cell Cycle gene family AT1G76310 54.185 9.26e-67 209.0
Lssa2g02840 . 18 388 Core Cell Cycle gene family AT5G10270 44.205 1.59e-105 326.0
Lssa2g01398 ACH 1 220 Core Cell Cycle gene family AT5G48820 40.417 1.29e-38 132.0
Lssa2g02339 ACH 2 423 Core Cell Cycle gene family AT2G17620 56.164 1.17e-148 427.0
Lssa1g02013 . 14 304 Core Cell Cycle gene family AT1G76540 26.316 9.53e-29 113.0
Lssa1g00198 . 109 238 Core Cell Cycle gene family AT3G11520 47.143 2.04e-27 106.0
Lssa1g00075 ACH 67 331 Core Cell Cycle gene family AT2G22490 39.571 2.51e-59 195.0
Lssa1g00945 . 18 364 Core Cell Cycle gene family AT5G10270 48.011 2.85e-109 335.0
Lssa1g00863 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.796 9.41e-148 420.0
Lssa1g04240 . 58 299 Core Cell Cycle gene family AT4G03270 42.857 1.02e-53 175.0
Lssa1g00254 . 116 339 Core Cell Cycle gene family AT2G26760 43.556 1.00e-55 179.0
Lssa1g00548 . 18 383 Core Cell Cycle gene family AT5G10270 45.119 2.54e-101 317.0