AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03784 ATGGCGACAAAGAAGAGCGTAAGCAGTTTGAAGGAAGGAGATCTGAAGGGGAAGAAGGTGTTTGTTAGGGCTGATCTTAATGTACCCTTGGATGACAATTTTAAGATCACCGATGACACACGTATCCGCGCCGCCGTCCCTACTATCAAATATTTGATGTCCAATGGCGCCAGAATCATCCTCTCTTCTCACCTGGGACGTCCAAAGGGTGTTACACCAAAATACAGCCTGAAGCCACTTGTGCCTAGACTCTCCGAGCTCCTTGAAATCGAGGTCAAGATGGCAAGTGATTGCATAGGTCCAGAAGTTGAGAAACTGGTGGCTGAGCTCCCAGAGAGGGGTGTTTTGCTTCTTGAAAATGTCAGATTCTATAAGGAGGAAGAAAAGAACGATCCTGAATTTGCAAAGAAGCTTGCATCACTAGCAGACCTGTATGTTAATGATGCATTTGGCACTGCACATAGAGCACATGCATCCACAGAAGGTGTCACAAAGTACTTGAAACCTTCTGTTGCTGGATTCCTCATGCAAAAGGAGCTTGACTACCTAGTTGGAGCTGTATCCAATCCCAAGAAGCCATTTGCTGCCATTGTTGGAGGATCAAAGGTATCAAGTAAAATCGGTGTGATCGAGTCATTGTTAAAGAAGGTTAATGTCCTTATTCTTGGTGGAGGTATGATCTTCACTTTCTATAAAGCTCAAGGCCTCAAAGTTGGATCTTCACTTGTGGAAGAAGATAAACTCGATCTTGCAAAATCACTTCTTGAAAATGCCAAGGCTAAAGGGGTGTCTCTGTTACTCCCTACTGATGTTGTAATTGCTGACAAGTTTGCTGCAGATGCCAACAGCAAGATTGTTCCAGCCAATAGTATTCCTGATGGCTGGATGGGATTAGACATTGGTCCAGATTCCATTAAGTCATTCAGTGAAACTTTGGATACTACTCAAACTGTTATCTGGAATGGACCTATGGGTGTGTTTGAGTTTGAGAAGTTTGCTGCAGGAACAGAGGCTATTGCAAAGAAACTGGCGGAGCTTAGTGGAAAGGGGGTGACAACCATCATTGGAGGTGGTGATTCGGTTGCAGCAGTGGAGAAGGCTGGGCTAGCTGACAAGATGAGCCACATCTCGACAGGTGGCGGTGCCAGCTTGGAGCTTCTAGAAGGAAAAACACTTCCAGGTGTGCTCGCCTTGAATGACGCTTGA 1206 45.44 MATKKSVSSLKEGDLKGKKVFVRADLNVPLDDNFKITDDTRIRAAVPTIKYLMSNGARIILSSHLGRPKGVTPKYSLKPLVPRLSELLEIEVKMASDCIGPEVEKLVAELPERGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSSKIGVIESLLKKVNVLILGGGMIFTFYKAQGLKVGSSLVEEDKLDLAKSLLENAKAKGVSLLLPTDVVIADKFAADANSKIVPANSIPDGWMGLDIGPDSIKSFSETLDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03784 401 PIRSF Pgk 2 401 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 Pfam Phosphoglycerate kinase 11 390 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 Hamap Phosphoglycerate kinase [pgk]. 9 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PANTHER PHOSPHOGLYCERATE KINASE 3 400 IPR001576 GO:0004618(InterPro)|GO:0004618(PANTHER)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Lssa7g03784 401 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 Gene3D - 187 399 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 353 364 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 317 342 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 PRINTS Phosphoglycerate kinase family signature 376 393 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 CDD Phosphoglycerate-kinase 10 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 FunFam Phosphoglycerate kinase 189 376 - -
Lssa7g03784 401 Gene3D - 7 184 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 SUPERFAMILY Phosphoglycerate kinase 8 400 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Lssa7g03784 401 FunFam Phosphoglycerate kinase 11 184 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03784 K00927 phosphoglycerate kinase [EC:2.7.2.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:118655979 Lssa7g03784 Lssa-Chr7:198757704 dispersed