AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03785 | ATGGCATCCGCCTTTCTTTCAAGAACTCTCTTTGCACATCGTTTCGTCTCGTCTTTCGCCTTCAACCAAAAACCCCAAAAATTAGCGCCCCTTTTCTTCAAGAAACCCCTTCATTCGTGGGCTTTCCCATCTCAATCGGTGTACAGGAGGCAGACCTTAGTTCGTAGTGACATGGCTTCCACCATGGTTGGATCTACCTCTCCTTTCTCAACACAGTCCATGTCAACTTCTGAGCCTGTTGTTTCAGTTGACTGGCTTCATGCCAATCTTCGTGAGCCTGATATGAAGGTACTGGATGCATCCTGGTACATGCCTGATGAACAAAGAAATCCACTTCAAGAGTATCAAGTTGCACACATTCCTGGTGCTCTTTTCTTTGATGTAGATGGGATATCTGATCGCACTACTAATCTGCCACACATGTTGCCATCTGAAGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGTATTGAAAACAAAGATGGAGTTGTTGTTTATGATGGTAAGGGGATCTTCAGTGCTGCTCGTGTCTGGTGGATGTTTCGAGTTTTTGGACATGATAGAGTATGGGTGTTAGATGGAGGCCTTCCTATGTGGAGAGCTTCAGGTTTTGATGTTGAATCGAGTGCTTCAAGTGATGCTATATTGAAAGCTAGTGCTGCCAGCGAGGCAATAGAAAAAGTATACCATGGCCAAGCTGTTGGTCCAGTTACATTTCAAACAAAATATCAACCACATCTTGTATGGACACTTGAACAGGTTAAAAAGAACACAGAAGACCAAACACATCAACATGTAGATGCTCGGTCAAAGGCCAGGTTTGATGGAGTTGCAGCTGAGCCTAGAAAAGGAATAAGAAGTGGCCATGTGCCTGGGAGCAAGTGCATTCCTTTTGCTCAGATGTTGGACAGCTCACAGACACTACTATCAGCAGACCAACTTAAGAAAAAGTTTGAACAAGAGGGAATCTCATTGGAGGGACCTGTTATGGCTTCATGTGGCACTGGAGTCACCGCATGCATTCTTGCATTGGGACTCCATCGACTTGGGAAGACAGATGTTCCGGTTTATGACGGATCTTGGACAGAATGGGGAGCACAAGAAGATACTCCTGTTGCAACTTCAACTCCAACTCCAACATCTTGA | 1146 | 45.03 | MASAFLSRTLFAHRFVSSFAFNQKPQKLAPLFFKKPLHSWAFPSQSVYRRQTLVRSDMASTMVGSTSPFSTQSMSTSEPVVSVDWLHANLREPDMKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPMWRASGFDVESSASSDAILKASAASEAIEKVYHGQAVGPVTFQTKYQPHLVWTLEQVKKNTEDQTHQHVDARSKARFDGVAAEPRKGIRSGHVPGSKCIPFAQMLDSSQTLLSADQLKKKFEQEGISLEGPVMASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAQEDTPVATSTPTPTS | 381 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03785 | 381 | FunFam | Sulfurtransferase | 244 | 375 | - | - | |
| Lssa7g03785 | 381 | Pfam | Rhodanese-like domain | 250 | 366 | IPR001763 | - | |
| Lssa7g03785 | 381 | Pfam | Rhodanese-like domain | 82 | 201 | IPR001763 | - | |
| Lssa7g03785 | 381 | SUPERFAMILY | Rhodanese-Cell cycle control phosphatase | 252 | 379 | IPR036873 | - | |
| Lssa7g03785 | 381 | CDD | TST-Repeat-2 | 250 | 366 | - | - | |
| Lssa7g03785 | 381 | ProSitePatterns | Rhodanese signature 1. | 115 | 126 | IPR001307 | GO:0004792(InterPro) | |
| Lssa7g03785 | 381 | SUPERFAMILY | Rhodanese-Cell cycle control phosphatase | 78 | 210 | IPR036873 | - | |
| Lssa7g03785 | 381 | PANTHER | THIOSULFATE SULFERTANSFERASE | 73 | 376 | IPR045078 | GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro) | |
| Lssa7g03785 | 381 | FunFam | Sulfurtransferase | 73 | 215 | - | - | |
| Lssa7g03785 | 381 | CDD | TST-Repeat-1 | 80 | 203 | - | - | |
| Lssa7g03785 | 381 | ProSiteProfiles | Rhodanese domain profile. | 259 | 373 | IPR001763 | - | |
| Lssa7g03785 | 381 | ProSiteProfiles | Rhodanese domain profile. | 91 | 208 | IPR001763 | - | |
| Lssa7g03785 | 381 | Gene3D | - | 244 | 375 | IPR036873 | - | |
| Lssa7g03785 | 381 | SMART | rhod-4 | 81 | 205 | IPR001763 | - | |
| Lssa7g03785 | 381 | SMART | rhod-4 | 249 | 370 | IPR001763 | - | |
| Lssa7g03785 | 381 | ProSitePatterns | Rhodanese C-terminal signature. | 354 | 364 | IPR001307 | GO:0004792(InterPro) | |
| Lssa7g03785 | 381 | Gene3D | - | 72 | 215 | IPR036873 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03785 | K01011 | thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr4:128405429 | Lssa7g03785 | Lssa-Chr7:198761071 | dispersed | |
| Lssa | Lssa-Chr7:198761071 | Lssa9g03697 | Lssa-Chr9:183522797 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lssa9g01010 | . | 1 | 221 | Sulfurtransferasese/Rhodanese gene family | AT2G42220 | 64.706 | 1.14e-99 | 288.0 | |
| Lssa9g03697 | . | 95 | 179 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 84.706 | 2.70e-50 | 160.0 | |
| Lssa9g01844 | . | 68 | 438 | Sulfurtransferasese/Rhodanese gene family | AT1G17850 | 61.518 | 6.22e-170 | 482.0 | |
| Lssa9g02340 | . | 82 | 455 | Sulfurtransferasese/Rhodanese gene family | AT2G40760 | 72.727 | 0.0 | 568.0 | |
| Lssa9g00606 | . | 82 | 257 | Sulfurtransferasese/Rhodanese gene family | AT4G01050 | 40.909 | 7.71e-31 | 120.0 | |
| Lssa8g00195 | . | 1 | 224 | Sulfurtransferasese/Rhodanese gene family | AT4G27700 | 64.957 | 1.11e-105 | 303.0 | |
| Lssa8g05050 | . | 95 | 181 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 79.31 | 1.87e-46 | 150.0 | |
| Lssa8g02789 | . | 95 | 180 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 80.233 | 9.34e-47 | 158.0 | |
| Lssa7g02689 | . | 17 | 581 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 59.76 | 0.0 | 667.0 | |
| Lssa7g03785 | . | 1 | 372 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 72.606 | 0.0 | 573.0 | |
| Lssa7g03701 | . | 97 | 176 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 62.5 | 9.08e-26 | 102.0 | |
| Lssa6g00939 | . | 17 | 145 | Sulfurtransferasese/Rhodanese gene family | AT5G03455 | 68.217 | 3.75e-66 | 196.0 | |
| Lssa5g02000 | . | 94 | 299 | Sulfurtransferasese/Rhodanese gene family | AT5G19370 | 67.788 | 1.68e-104 | 305.0 | |
| Lssa5g01965 | . | 27 | 142 | Sulfurtransferasese/Rhodanese gene family | AT2G17850 | 50.413 | 9.93e-37 | 121.0 | |
| Lssa5g04734 | . | 31 | 198 | Sulfurtransferasese/Rhodanese gene family | AT3G08920 | 62.353 | 5.13e-77 | 229.0 | |
| Lssa5g00114 | . | 1 | 464 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 66.736 | 0.0 | 648.0 | |
| Lssa5g00398 | . | 72 | 261 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 24.424 | 8.30e-11 | 61.6 | |
| Lssa4g01819 | . | 95 | 176 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 82.927 | 1.47e-46 | 151.0 | |
| Lssa4g02702 | . | 95 | 179 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 80.0 | 4.87e-46 | 149.0 | |
| Lssa4g03946 | . | 10 | 383 | Sulfurtransferasese/Rhodanese gene family | AT5G23060 | 65.775 | 2.70e-175 | 492.0 | |
| Lssa4g03255 | . | 95 | 179 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 83.529 | 5.42e-49 | 157.0 | |
| Lssa3g02449 | . | 45 | 181 | Sulfurtransferasese/Rhodanese gene family | AT4G35770 | 60.584 | 1.93e-57 | 177.0 | |
| Lssa3g04777 | . | 1 | 456 | Sulfurtransferasese/Rhodanese gene family | AT4G01050 | 53.617 | 8.23e-139 | 405.0 | |
| Lssa3g02262 | . | 47 | 216 | Sulfurtransferasese/Rhodanese gene family | AT5G55130 | 30.811 | 3.35e-12 | 66.2 | |
| Lssa2g02587 | . | 95 | 181 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 63.393 | 1.12e-42 | 142.0 | |
| Lssa2g02397 | . | 24 | 146 | Sulfurtransferasese/Rhodanese gene family | AT2G17850 | 54.839 | 1.21e-44 | 142.0 | |
| Lssa1g00093 | . | 343 | 487 | Sulfurtransferasese/Rhodanese gene family | AT1G09280 | 31.081 | 2.41e-10 | 56.6 | |
| Lssa1g00282 | . | 95 | 179 | Sulfurtransferasese/Rhodanese gene family | AT1G79230 | 83.529 | 1.02e-49 | 159.0 | |
| Lssa1g00539 | . | 96 | 179 | Sulfurtransferasese/Rhodanese gene family | AT5G19370 | 34.021 | 2.54e-08 | 49.3 |