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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03789 ATGGGTGACAGTCAGTACTCGTTCTCTCTTACTACTTTCAGCCCTTCTGGAAAGCTTGTTCAGATTGAACATGCCCTCACAGCTGTTGGCTCTGGGCAAACTTCATTGGGGATAAAAGCTTCAAATGGAGTTGTAATTGCAACTGAAAAGAAGCTCCCATCAATCTTAGTCGATGAGACATCGGTGCAAAAGATTCAGATTTTGACTCCTAACATTGGAGTTGTATATAGTGGCATGGGGCCTGATTCTAGAGTTCTAGTCAGGAAGAGCAGGAAGCAAGCAGAACAATACCATCGACTATACAAAGAGCCAATCCCTGTTACACAACTTGTAAGGGAAACTGCTGCTGTTATGCAAGAGTTTACTCAATCTGGTGGTGTAAGGCCTTTTGGTGTTTCACTCCTTGTTGCTGGTTATGATGACAAAGGTCCTCAACTATATCAGGTGGACCCCTCAGGTTCATATTTCTCATGGAAAGCTTCTGCCATGGGAAAGAATGTGTCTAATGCAAAAACATTTCTTGAAAAGAGGTACACTGATGATATGGAGCTTGAGGATGCCATACACACAGCTATTTTAACATTGAAGGAGGGATTTGAAGGACAAATTTCTGGAAAAAATATTGAGATTGGTGTGATTGAGGCAGACAAAACATTCAGAGTCTTAACTGCAGCTCAAATCGAAGACTATCTTCAAGAGGTGGAATAG 708 41.81 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADKTFRVLTAAQIEDYLQEVE 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03789 235 ProSiteProfiles Proteasome alpha-type subunit profile. 21 231 IPR023332 -
Lssa7g03789 235 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 235 IPR029055 -
Lssa7g03789 235 FunFam Proteasome subunit alpha type 3 235 - -
Lssa7g03789 235 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 4 232 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Lssa7g03789 235 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 234 IPR029055 -
Lssa7g03789 235 CDD proteasome-alpha-type-2 6 231 - -
Lssa7g03789 235 Pfam Proteasome subunit 31 213 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Lssa7g03789 235 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Lssa7g03789 235 SMART Proteasome-A-N-2 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Lssa7g03789 235 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03789 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:46894249 Lssa7g03789 Lssa-Chr7:199063688 dispersed
Lssa Lssa-Chr5:320911841 Lssa7g03789 Lssa-Chr7:199063688 dispersed
Lssa Lssa-Chr7:199063688 Lssa8g03575 Lssa-Chr8:158908739 dispersed