AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03814 | ATGAAAGAGAGCAGTACCAGTGGTGGCGCCGGAAGAAAACAAGGTGCGGCCTCACCTTGTGCCGCTTGCAAGCTTCTGCGGCGGAGATGCTCTCATGACTGTGTTTTTGCTCCCTATTTCCCAGCCGACGAGCCTCACAAGTTCGCCAGTGTTCATAAGGTGTTCGGTGCTAGCAATGTCAACAAAATGCTCCAGTTGAAACAATTGAGTTCAATCAACCGACCAAATAACGCTAACTCAACCACAAACTCGGGTACCCGTTTAGCATAA | 270 | 49.63 | MKESSTSGGAGRKQGAASPCAACKLLRRRCSHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQLKQLSSINRPNNANSTTNSGTRLA | 89 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03814 | 89 | ProSiteProfiles | LOB domain profile. | 18 | 89 | IPR004883 | - | |
| Lssa7g03814 | 89 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 66 | - | - | |
| Lssa7g03814 | 89 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 80 | IPR004883 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03814 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr7:200898147 | Lssa9g00700 | Lssa-Chr9:19887579 | dispersed | |
| Lssa | Lssa-Chr7:200898147 | Lssa8g00739 | Lssa-Chr8:25788888 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lssa9g00376 | ACH | 7 | 245 | AS2 family | AT2G42430 | 57.322 | 6.25e-81 | 239.0 | |
| Lssa9g00377 | ACH | 11 | 128 | AS2 family | AT3G58190 | 77.236 | 2.79e-66 | 202.0 | |
| Lssa9g00700 | . | 3 | 193 | AS2 family | AT2G30130 | 69.271 | 5.18e-83 | 241.0 | |
| Lssa7g03813 | . | 58 | 171 | AS2 family | AT1G31320 | 57.759 | 2.86e-28 | 99.8 | |
| Lssa7g00316 | ACH | 4 | 119 | AS2 family | AT4G00210 | 69.828 | 1.11e-58 | 181.0 | |
| Lssa7g03814 | . | 1 | 59 | AS2 family | AT1G31320 | 81.538 | 1.59e-33 | 112.0 | |
| Lssa7g02908 | ACH | 3 | 131 | AS2 family | AT5G67420 | 62.791 | 1.05e-53 | 169.0 | |
| Lssa5g05791 | ACH | 1 | 240 | AS2 family | AT2G42440 | 48.996 | 7.98e-68 | 207.0 | |
| Lssa5g05792 | ACH | 10 | 245 | AS2 family | AT2G42430 | 50.617 | 7.82e-69 | 208.0 | |
| Lssa5g05038 | . | 6 | 234 | AS2 family | AT3G13850 | 45.455 | 8.82e-57 | 184.0 | |
| Lssa5g03502 | ACH | 1 | 132 | AS2 family | AT3G49940 | 72.932 | 1.40e-63 | 196.0 | |
| Lssa4g01356 | ACH | 18 | 173 | AS2 family | AT4G00220 | 64.881 | 4.48e-66 | 202.0 | |
| Lssa4g00395 | ACH | 1 | 107 | AS2 family | AT3G26660 | 61.682 | 9.14e-50 | 153.0 | |
| Lssa4g06014 | . | 27 | 164 | AS2 family | AT3G47870 | 48.201 | 2.71e-37 | 131.0 | |
| Lssa4g05689 | . | 1 | 106 | AS2 family | AT3G26660 | 64.151 | 1.15e-51 | 160.0 | |
| Lssa4g04454 | ACH | 1 | 106 | AS2 family | AT3G49940 | 71.698 | 8.46e-53 | 167.0 | |
| Lssa3g02926 | . | 1 | 249 | AS2 family | AT5G67420 | 54.118 | 5.03e-80 | 238.0 | |
| Lssa2g04078 | . | 3 | 119 | AS2 family | AT2G30130 | 83.761 | 8.15e-70 | 209.0 | |
| Lssa2g02732 | . | 3 | 247 | AS2 family | AT5G66870 | 50.769 | 2.23e-76 | 233.0 | |
| Lssa1g00898 | ACH | 1 | 139 | AS2 family | AT4G37540 | 58.904 | 6.88e-55 | 172.0 | |
| Lssa1g01367 | . | 35 | 246 | AS2 family | AT3G13850 | 44.074 | 9.06e-57 | 185.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Lssa | LOB | 4.6e-22 | No_clan | TF | LOB |