AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03818 ATGAATATGATTCCACCAAATACGAGCATGGACGCTGCAAGGAAACAGTTCTTGAAGGAATTCGGTGAATCTTACGGTTATCCGAATGCTCCCAAGCACATCGATGATCTCCGAGCTACTGAATTTAAAAGACTCGATGGAAATGTCTACTTGGATCACGCTGGTGCAACTTTATATTCTGAATTACAGATGGAGGCAATATTTAGAGATCTTACTACCACTGTATACGGAAATCCTCATACTCAAAGCAGCTCTAGCTTGACCTCATCAGACATTGTAGAAGATGCTCGTCATCAGGTTCTCAAAATCTGTAATGCATCACCAAAAGAGTACAAATGTATTTTCACTTCTGGAGCAACAGCAGCTCTTAAACTTGTTGGTGAGGCTTTTCCTTGGAGCAATGAAAGCACTTTCATGTATACAATTGAGAACCACAACAGTGTCCTTGGGATCAGAGAGTATGCTCTCAATAAAGGAGCTGCAGCATTAGCAATAGACTTTGAGGAAACTGCACAATCTGATACATTTGGAAGCACTAAATCTTCCATCAAAGTCTCACAGTATCCTATACCAAAGAGAAGTGAAGCTAGGGTTTCAAACAAAGATCCTACTGGACATACATACAATTTATTTGCTTTTCCTACAGAGTGTAATTTCTCAGGAGTGAGGTTTAATCTTGATTTGATAGACATGATTAAGGAAGATTCAGAGCGAATATTGGGAGGTTCTCAACATTCCAGGGGATCATGGATGGTTTTACTTGATGCTGCAAAAGGTTGTTCTACAGAACCTCCGGATTTATCAAAGCATAAGGCAGATTTTGTTGTGATCTCATTTTACAAGCTTTTTGGCTATCCAACTGGACTTGGAGCTTTGGTAGTTGGAAATGAAGCTGCAAAATTACTAAAGAAGACCTACTTTAGTGGAGGGACAGTGGCTGCATCGATTGCTGACATTGACTTTGTGAAAAGAAGAGAAGGTATTGAAGAGTCATTTGAAGATGGAACATTATCATTCTTGAATATTGCATCCATTCGCCATGGATTTAATATCCTAAATACTCTCACCACATCAGCCATATCAAGGCATACCTCATCACTTGCAAGATATACAAAAAATATGCTTTTGGCATTAAGGCATGCAAATGGTGTGGAGGTTTGCAAGATATATGGACTTCATTCTCTAAAGGCAGTGTATAGTGGAGTTGGTCCTGTAATTTCTTTTAACTTGAAACGGTCTGATGGTTCTTGGGTTGGCCATCGTGAAGTGGAAAAATTGGCTTTTTTGTCTGGAATTCAACTAAGGACAGGATGCTTTTGTAATCCTGGTGCATGTGCCAAGTATCTTGGTTTATCTCATTCAGATCTGATATCCAACATTGAGGCTGGACATGTATGCTGGGATGATTATGATATATTAAATGGGAAACCAACTGGAGCTGTTAGAGTATCTTTTGGATATATGTCAACTTTTGAAGATGCATGGAAATTCATTGACTTTGTTGTGAGATCTTTTGTATTGTTGCCTACCAATGGTATAAATCTTAATCCATTAAGATCCACAGAAAGTTCACATCATCTTACATCAATTGTGGTGTATCCAATAAAGTCATGCTCAGGGTTCAGAGTGGACACTTGGCCTCTCAGCAGTACTGGATTGTTATATGATCGAGAGTGGCTTCTCAAAAGCATGAATGGTGAAGTTCTTACACAGAAGAAGGTACCTGAAATGTACTATATAAACACAAAGATTGACCTAAAAATGGGAATGCTTCATGTGGAATCTTCTAGATGCAAAGAGAAACTATCTATTGAACTCAAATCTGATACTTTTTCTGTAGTAGAAGAAATTAATATACATGCCCAAAGATATGAAGTTTTGGGATATGATAACAAGATTGACGAATGGTTTAGTAAAGCAGTTGGGCGTCCTTGTTATCTGTTAAGATCAAGTTCTAGACGCTGTAACCACTTTAACAGAAACAAAAACAAAAACATGGGCACATGTAGAGATGTGAATACTAGATTAAACTTCGTGAATGAAGCCCAGATTTTAATGGTATCTGAGGAGAGTGTATCTGACCTCAATTCTAGACTAGATTCTAACAGGTTTGTTGATCCAATGATATTCCGACCTAATCTAGTTATATCTGGTGGTGGGCCCTGTGTTGAAGACACGTGGACTGGTCTCAAGATTGGAAATAATCACTTCATGTCATTGGGTGGGTGTAATCGTTGCCAGATGATTAATTTGAATTATGAAGGTGGTGAGGTAAAGAGATCAAATGAGCCTTTAGCTACTTTAGCATCATACAGGAGAGAAAAGGGGAAAATACTCTTTGGAATTTTACTGAGGTATGAGTGTGACAATGAGGTTGGGGAAGAGATGTCTTCATGGCTTCAAGTGGGACAAGAAGTACACCCCGATACATAA 2433 38.64 MNMIPPNTSMDAARKQFLKEFGESYGYPNAPKHIDDLRATEFKRLDGNVYLDHAGATLYSELQMEAIFRDLTTTVYGNPHTQSSSSLTSSDIVEDARHQVLKICNASPKEYKCIFTSGATAALKLVGEAFPWSNESTFMYTIENHNSVLGIREYALNKGAAALAIDFEETAQSDTFGSTKSSIKVSQYPIPKRSEARVSNKDPTGHTYNLFAFPTECNFSGVRFNLDLIDMIKEDSERILGGSQHSRGSWMVLLDAAKGCSTEPPDLSKHKADFVVISFYKLFGYPTGLGALVVGNEAAKLLKKTYFSGGTVAASIADIDFVKRREGIEESFEDGTLSFLNIASIRHGFNILNTLTTSAISRHTSSLARYTKNMLLALRHANGVEVCKIYGLHSLKAVYSGVGPVISFNLKRSDGSWVGHREVEKLAFLSGIQLRTGCFCNPGACAKYLGLSHSDLISNIEAGHVCWDDYDILNGKPTGAVRVSFGYMSTFEDAWKFIDFVVRSFVLLPTNGINLNPLRSTESSHHLTSIVVYPIKSCSGFRVDTWPLSSTGLLYDREWLLKSMNGEVLTQKKVPEMYYINTKIDLKMGMLHVESSRCKEKLSIELKSDTFSVVEEINIHAQRYEVLGYDNKIDEWFSKAVGRPCYLLRSSSRRCNHFNRNKNKNMGTCRDVNTRLNFVNEAQILMVSEESVSDLNSRLDSNRFVDPMIFRPNLVISGGGPCVEDTWTGLKIGNNHFMSLGGCNRCQMINLNYEGGEVKRSNEPLATLASYRREKGKILFGILLRYECDNEVGEEMSSWLQVGQEVHPDT 810
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03818 810 SUPERFAMILY PLP-dependent transferases 41 502 IPR015424 -
Lssa7g03818 810 SUPERFAMILY MOSC N-terminal domain-like 527 657 - -
Lssa7g03818 810 Pfam MOSC domain 674 806 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Lssa7g03818 810 Pfam MOSC N-terminal beta barrel domain 526 644 IPR005303 -
Lssa7g03818 810 ProSiteProfiles MOSC domain profile. 653 809 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Lssa7g03818 810 Pfam Aminotransferase class-V 49 163 IPR000192 -
Lssa7g03818 810 Pfam Aminotransferase class-V 249 494 IPR000192 -
Lssa7g03818 810 Gene3D - 64 354 IPR015421 -
Lssa7g03818 810 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 12 506 - -
Lssa7g03818 810 Hamap Molybdenum cofactor sulfurase [MOCOS]. 24 808 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Lssa7g03818 810 SUPERFAMILY PK beta-barrel domain-like 671 762 IPR011037 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03818 K15631 molybdenum cofactor sulfurtransferase [EC:2.8.1.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:202180220 Lssa9g01200 Lssa-Chr9:36884131 dispersed
Lssa Lssa-Chr7:202180220 Lssa2g02743 Lssa-Chr2:180158667 transposed