AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03930 ATGGCTTCCCCTGGAAATCAAAATCAACAACCAGGTGGAGCTCCATTTGATGTTCAAAGATTGTTCAACCCTTCTTCTTCACCACCACCGATTTCACCAACCCTACAAAACCCTAATCATCCTTATCCTCCACCATCTTCCGCCGCTTCGTATCCTCCACCCACGGTTACCGGAGGTCCATACTCTTACCACCCTCCTCAAACTAACCCTCTTTTCCACCATCAATTTCATATCCCACCACCCCCTTTCCACCCTCAACAACAACCACCACCAGAGAATCATTTGCCTTCTAATTTGCAACACCAGCGATCACTTCCTTACCCGACATCCCCTCTTCAACCTCCCAGCCCTAAAAACACGAACCCTAACCATGGAGCTCGACTCATGGCTCTTTTAAGCGCCCCACCGCCTTCCATTCCCGATATTCCTTCCCAATCATCCATCCCTTTACCTAACCCTAATCTTAACTCTATGCTCCCTTCATCGACCGGTCCATCGCGTATGTCGAGCAGTAAGCTACCCAAGGGACGGCATTTAGTCGGTGATCGCGTTGTTTATGACATAGATGTTAGGTTGCCTGGAGAGATTCAGCCTCAACTTGAGGTCACTCCCATCACCAAGTATGGTTCAGATCCTTGTCTAGTGGTCGGTCGTCAGATTGCTGTTAACAAGACTTATATATGTTATGGTTTGAAACCGGGAACTATCAGGGTTCTTAATATAAACACTGCATTAAGATCACTGCTTAAAGGTCTTGCTCAGAGGGTTACAGATATGGCTTTCTTTGCGGAAGATGTTCACCTTTTAGCTAGTGCAAGCATGGATGGACGAGTTTACGTATGGAAGATTACAGAAGAACCCGATGAAGATGATAAGCCACAAATTACAGGAAAGATAGTTACAGCCGTCCAAATTGCAGGAGAAGGAGAACCTGTTCATCCTCGAGTTTGTTGGCACTGCCATAAACAAGAGGTTCTTGTAGTTGGAATTGGAAATCGTATACTTAGATTTGATACTACAAAGATTGGGAGAGGTGAAACATATTCTGCAGATGAACCACTCAGATGCCATGTTGACAAGTTGATTGATGGAATTCAGTTTGTTGGCAAACATGATGGTGAAGTGACAGATTTATCAATGTGCCAATGGATGACCACTCGTTTGGTTTCTGCTTCAGTAGATGGAACAATCAAAATCTGGGAAGACCGTAAATCATCTCCAATTGCAGTGCTGAGGCCACATGATGGTCTTCCGGTCAACTCTGTTACATTCTTGACTGCCCCTCATCGCCCAGATCACATCATACTGATCACCGGGGGTCCCTTGAACCGTGAAATGAAAATATGGGCTTCAGAAAGTGAAGAAGGATGGTTGCTTCCTAGTGATGCTGACTCATGGCATTGTACTCAAACATTGGAACTGAAGAGTTCTGAAACAAGAACTGAAGATTCCTTCTTCAATCAAGTTGTTGCATTATCTCAATCCGGTCTTCTCTTATTAGCAAATGCCAAGAAAAATGCTATTTATGCTGTCCACCTGGATTATGGTCCAAACCCGGAATCCACCCGGATGGATTACATTGCAGAATTCACTGTCACTATGCCAATTTTGAGCTTTACTGGCACTAGTGATCTCTTACCACATGGGGAACACATCATTCAGGTTTATTGTGTCCAAACACAAGCCATTCAGCAATATGCTTTGGACTTGTCTCAATGCCTACCACCTCCATTTTATGATGAAAAAATTGGTTTGGAAAGCAAATTGGATGACATGCCATTGGCGGAAGCTTCCGCCTCTTCCCTAAATGAGACTGATATTTCTTGTGTTTTGTCACCACCAGTTTCTTCAAGCCCTAAGTTATCTAGAAATGTTTCTGACCTGAGAACTCCATCTGGCGGTTTTGAGCCACGTCAGCAAGTAAATGGTTATGAGGATCTGAAGATTCTGGAAACTTCTAATTCAAATTTGGCTAATACGCCCTCGCTGGATGATGATACAAGGATTGATGAAAGTAAAGTTGTTAAAGATGATCGAACTGTTAAATTTATGCATCCGACTCATCTAGTGACTCCTGCTGAATTGATGGCCACGTCATCATCTGAAATAAATCATGTTACAGAGGTAACACATGACGTGGCGGTCAACCCAGATACGCAGAATGCTGAGGTGGAGGTGAAGGTTGTGCGTGAAATGGGAACGAGTCAAAATGCTGACGAGGCGAAGGAAAAGTCAAAATTATTCTCGTCACAGGCATCGGGACTCGGAATCGATATGGCACGGGAGACTTACGAGCTGAAACAACTTGATGAGGTGGCGGATCAAACTTCAGATGTTCTGGATGATGTTCAAGACATGGAAATTGAGTCGGCTGTTCCTGTGGGTCCCACATCAAAATCAAAAAAGAAAAAGGGAAAGAATGCTCAAAGCGTGTTGAAGTCAACCGATTCGTGTGATGAATTAGGTGGGAGTTTGAGTTTGAGCATCCTTTCACAAATTCAGTCAATGCAAGAAGCAATTGGTCAAATTCTGAGCAGTCAAAAGGAAATCCAGAAGCAGATTCCGGTGGTGGTTGGGAGCCCGATTACAAAAGAAGGAAAAAGGATCGAGGCGGGAATCGGGAAAACCATGGAGAAAATTCATAAAGCCAATTCTGATGCTTACCTGGCGCGTTGTCAAGAAGAGTTTGCAAAACAGGAAAAGTCAAACCGGGAACGCTATCAGCAGATCGCCACGTCAGCTGCAAACAGTCACAAGGAATTGCTTACATCATCCGAGAAAATCTTGAAGAAGGAAATGGCTGCAGTGGGGCCCGCTGTCGGACGATCTGTTACTCCAGTTATCGAAAAGGTAGTCACGACAGCTGTCTCCGAGGCTTTCCAGAGAGGCATAGGTGATAAGGCTGTAAATCAGTTGGAAAAAACAGTTAATACCAAGCTTGAAGCAACTGTTTCAAGGCAAATTCAAGTCCAATTTCAAACATCTGGAAAACAAGCTTTACAGGAAGCACTGAAGAGTAGTATGGAAGCTTCTGTTCTTCCTGCTTTCGAGATGTCCTGCAAAACCATGTTTGACCAAATTGACTCCACATTTCAAAAAGGAATGGTTGACCATACAACCGCAGCTCATCAGCAAGTTGAATCTATACATTCGCCTTTAGCATTTGCTTTGAGGGATACTATCAATTCAGCATCATCGATAACTCAAACATTGACCAGTGAGTTGACTGATGGTCAACGGAAATTGGTGGCTCTTGCAGGGTCAAAATCGATGGAAGCACCAGTGGATCCAACAAAAGAGCTATCAAGATTAGTATACGAGCACAAATACGAGGAGGCTTTTACTTCCGCCCTTCAAAGAAGTGATGTACGGATCGTTTCCTGGTTATGCTCACAGGTGGATTTACAGGGGATATTAACGAGTAATCCTGTACCTTTGAGCCAAGGGGTATTACTGTCATTACTGCAGCAGTTGGCATGTGATATCGGGAACGATACATCTAGGAAACTTGGATGGATGATGGATGTAGTGGTGGCGATCAAACCAACGGATGGGATCATCGCGATGCATGTGAGGCCGATATTTGAACAGGTGTATTCAATCATGAACCATCAATCGAGTATTCCCACGACTTCCGTTGCTGAGCTGTCAAGCATACGTGTTGTTATGAGGCTTGTCAACTCTACACTTCGGACCATGTAA 3702 44.17 MASPGNQNQQPGGAPFDVQRLFNPSSSPPPISPTLQNPNHPYPPPSSAASYPPPTVTGGPYSYHPPQTNPLFHHQFHIPPPPFHPQQQPPPENHLPSNLQHQRSLPYPTSPLQPPSPKNTNPNHGARLMALLSAPPPSIPDIPSQSSIPLPNPNLNSMLPSSTGPSRMSSSKLPKGRHLVGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPCLVVGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASMDGRVYVWKITEEPDEDDKPQITGKIVTAVQIAGEGEPVHPRVCWHCHKQEVLVVGIGNRILRFDTTKIGRGETYSADEPLRCHVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPHDGLPVNSVTFLTAPHRPDHIILITGGPLNREMKIWASESEEGWLLPSDADSWHCTQTLELKSSETRTEDSFFNQVVALSQSGLLLLANAKKNAIYAVHLDYGPNPESTRMDYIAEFTVTMPILSFTGTSDLLPHGEHIIQVYCVQTQAIQQYALDLSQCLPPPFYDEKIGLESKLDDMPLAEASASSLNETDISCVLSPPVSSSPKLSRNVSDLRTPSGGFEPRQQVNGYEDLKILETSNSNLANTPSLDDDTRIDESKVVKDDRTVKFMHPTHLVTPAELMATSSSEINHVTEVTHDVAVNPDTQNAEVEVKVVREMGTSQNADEAKEKSKLFSSQASGLGIDMARETYELKQLDEVADQTSDVLDDVQDMEIESAVPVGPTSKSKKKKGKNAQSVLKSTDSCDELGGSLSLSILSQIQSMQEAIGQILSSQKEIQKQIPVVVGSPITKEGKRIEAGIGKTMEKIHKANSDAYLARCQEEFAKQEKSNRERYQQIATSAANSHKELLTSSEKILKKEMAAVGPAVGRSVTPVIEKVVTTAVSEAFQRGIGDKAVNQLEKTVNTKLEATVSRQIQVQFQTSGKQALQEALKSSMEASVLPAFEMSCKTMFDQIDSTFQKGMVDHTTAAHQQVESIHSPLAFALRDTINSASSITQTLTSELTDGQRKLVALAGSKSMEAPVDPTKELSRLVYEHKYEEAFTSALQRSDVRIVSWLCSQVDLQGILTSNPVPLSQGVLLSLLQQLACDIGNDTSRKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVYSIMNHQSSIPTTSVAELSSIRVVMRLVNSTLRTM 1233
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03930 1233 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 202 513 IPR032401 -
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 612 637 - -
Lssa7g03930 1233 Gene3D - 219 362 IPR015943 GO:0005515(InterPro)
Lssa7g03930 1233 FunFam enhancer of mRNA-decapping protein 4 201 514 - -
Lssa7g03930 1233 Gene3D - 1146 1232 IPR044938 -
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 790 811 - -
Lssa7g03930 1233 SMART WD40-4 362 401 IPR001680 GO:0005515(InterPro)
Lssa7g03930 1233 SMART WD40-4 242 282 IPR001680 GO:0005515(InterPro)
Lssa7g03930 1233 SMART WD40-4 404 450 IPR001680 GO:0005515(InterPro)
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 75 92 - -
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 612 639 - -
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 1 175 - -
Lssa7g03930 1233 SUPERFAMILY WD40 repeat-like 214 514 IPR036322 GO:0005515(InterPro)
Lssa7g03930 1233 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 20 1232 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Lssa7g03930 1233 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1103 1205 IPR049404 -
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 93 107 - -
Lssa7g03930 1233 FunFam Enhancer of mRNA-decapping protein 4 1146 1232 - -
Lssa7g03930 1233 Gene3D - 363 552 IPR015943 GO:0005515(InterPro)
Lssa7g03930 1233 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 410 IPR001680 GO:0005515(InterPro)
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 148 170 - -
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 1 25 - -
Lssa7g03930 1233 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 283 IPR001680 GO:0005515(InterPro)
Lssa7g03930 1233 MobiDBLite consensus disorder prediction 26 51 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03930 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
128150 Lssa7g03930 Lssa9g03239
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:205331286 Lssa9g01354 Lssa-Chr9:42539535 dispersed
Lssa Lssa-Chr1:7388696 Lssa7g03930 Lssa-Chr7:205331286 transposed
Lssa Lssa-Chr4:118621468 Lssa7g03930 Lssa-Chr7:205331286 transposed
Lssa Lssa-Chr4:370280143 Lssa7g03930 Lssa-Chr7:205331286 transposed
Lssa Lssa-Chr7:205331286 Lssa9g03239 Lssa-Chr9:159855541 wgd