AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03937 ATGAAAGATGTTGTTATGAAGAAATACAAGAGAGCAAAAACAAACCTAGAAATGTTGTGTAAGTTTGGAGCTCAAATACTACACGGAGTTGATTCAACCATAATGAAGCTTCACATGGATCTTCGAATGCGGAAGTTTGACCGGATTGTATACAATTTCCCACATGCTGGTTTTTTGGGGAAGGAAAGTGATCACTTGGTCATCATGAAGCATAGAAATTTGGTACGTGGTTTCTTGAGAAACGCAAGTGGCATGTTGCGTCCAAACGGTGAAATTCATGTGACACACAAGGCTGCTCGCCCGTTTGACTCATGGAATATTGAAGAATTGGCAACTCAAAGTGGTTTAACATTGATTGAATGTGTCGAATTCAAGATTGAAGATTATCCCGGTTACAACAACAAAAGAGGAGCTGGTAGGAATCCCGACGGAGCATTTCCTCTAGGGGAATGCAATACTTTTAAATTCATAGTAACTTCAAAACCCTTGAAACTATTGCGTCAAAAACCTCGAGAAATTCCATTACAAAGAGCGAATGAACAGATTGTTATGAATCCTTTGCAAACTGGTGATTGCTTTTGGATTTTCAAGGAGTATTTCAATCATGCACGATACACCTTTGGGGAACCTGATTATTTTCTCCCGTATAATGTTCCGGACATGCTGAGATTAGGGTTTGAAAGATACAATGCAGATGATTGTGGGAAACCCTTGGATGGTTATTTAAATCATTTGGAAGAGCTTTGGAATTTAAGCAGAAGGAGGCTAGTATTCTTGCGAAACAGATTATGGGAAATTGATCATCAGTATTAA 813 38.75 MKDVVMKKYKRAKTNLEMLCKFGAQILHGVDSTIMKLHMDLRMRKFDRIVYNFPHAGFLGKESDHLVIMKHRNLVRGFLRNASGMLRPNGEIHVTHKAARPFDSWNIEELATQSGLTLIECVEFKIEDYPGYNNKRGAGRNPDGAFPLGECNTFKFIVTSKPLKLLRQKPREIPLQRANEQIVMNPLQTGDCFWIFKEYFNHARYTFGEPDYFLPYNVPDMLRLGFERYNADDCGKPLDGYLNHLEELWNLSRRRLVFLRNRLWEIDHQY 270
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03937 270 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 3 136 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
Lssa7g03937 270 PANTHER PHENYLALANYL-TRNA SYNTHETASE 4 137 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Lssa7g03937 270 Gene3D Vaccinia Virus protein VP39 3 124 IPR029063 -
Lssa7g03937 270 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 125 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03937 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:205507999 Lssa7g03937 Lssa-Chr7:205551574 dispersed
Lssa Lssa-Chr7:205551574 Lssa9g03916 Lssa-Chr9:197804014 dispersed
Lssa Lssa-Chr7:205547729 Lssa7g03937 Lssa-Chr7:205551574 tandem