AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03950 ATGGAAGAATCGCAAGAGATTTTGTTGAAATCGCTGGCGAACGCTGGGGTTGCGATTCCGCGGGAGGCTTTGTCAGTTGGAGATCTAACACCGGAAGCGTTGGTGTCGATCTGTGCTCATTCTCTTCGTATAATTTCGAGCTCGGAATCCTTTCCGATCACTTTGCCGGATTCTATGGTCGATCGTTTTAAAATCTGCACCGATCTTGCCTCATCCGTCAAAGACCTAGGTTACATCGGCGACATGAGCTTCCATAAGTTCCTGTATCCATCCGAAGAAGACATGTATAGGTTGATAAGATTTTTGGTTGGGAAGCTCTCTGAATCATCTACAACTGCAGTATTATTAAACACAAAGGATAATAATGCAAAAGCAATGATAAATGATGAAAAATCAGAAAGATCATCCAATGATGAGGAACAAGATTTGCATACCAAATTCGAAGGCGTAAAACTGAGAACTGAAGAAGCGGTGTCAAATTCAATTCAGTATCCTGAAGAAGATTTTGGAGCTCATGATTTGTTGAAAGCAGCAGTGGAAATGGCTTGTGATGAACAACACATCGATTCACACATTACACAGCTAAATGAGCAAATAGACGCCAGGAAAAACAATCTTGCAAAACTGGAGTCAAAATGGAAAGCCATCATAAAGCCTTTAGAAGATAAAAAAAGAAATCTTGAAGAAGCACTATGTGCAAATCAGCCAGAGTCTCAAGACCTGGAGTCCATATTGTTTGAAACAAAGCAGAGGGAAGAGGAAATTTCCAAGGTGTCAAGAGAAGTTGAGAAAGTAGCGAAATTGGCAACAAGGAGATCTTACATTGAACGGATAAAAGAGATCACAAAAAACAGCAGGAAACAGGAGATTGACATAGAACGGATCTTAAAAGAGACCCGAGAGCTTCAGTTGGAAAGTAACATCATTCAAGAACGCCTGCATCGAACTTACGCTGTGGTGGATGAGACACTACTCAGGGAAGCAAAGAAGGATCAAGTGGGGGAAGAAGCACACATTTTGGTGACAGGTATCCATGAGAGTTTTGAAGAAATATCTGAAAAGATCCTTGCAACTGACAGAGCTCGTAGAGAAATGACAGACCTTGAAACTAAGCTTTCGAGTATTGCTTCACGAACTTTAAATATCGACAAACTACAGGCAGATCTTGATGCCTTAAGGAAAGAAAACAACTACCTTCAATCTCTCTGTATCTCCCCCTCGCTTCAGTAG 1230 41.22 MEESQEILLKSLANAGVAIPREALSVGDLTPEALVSICAHSLRIISSSESFPITLPDSMVDRFKICTDLASSVKDLGYIGDMSFHKFLYPSEEDMYRLIRFLVGKLSESSTTAVLLNTKDNNAKAMINDEKSERSSNDEEQDLHTKFEGVKLRTEEAVSNSIQYPEEDFGAHDLLKAAVEMACDEQHIDSHITQLNEQIDARKNNLAKLESKWKAIIKPLEDKKRNLEEALCANQPESQDLESILFETKQREEEISKVSREVEKVAKLATRRSYIERIKEITKNSRKQEIDIERILKETRELQLESNIIQERLHRTYAVVDETLLREAKKDQVGEEAHILVTGIHESFEEISEKILATDRARREMTDLETKLSSIASRTLNIDKLQADLDALRKENNYLQSLCISPSLQ 409
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03950 409 Coils Coil 375 402 - -
Lssa7g03950 409 Pfam CCDC22 protein coiled-coil region 188 377 IPR048348 -
Lssa7g03950 409 Coils Coil 278 298 - -
Lssa7g03950 409 Coils Coil 192 212 - -
Lssa7g03950 409 Pfam CCDC22 protein N-terminal domain 1 107 IPR048349 -
Lssa7g03950 409 PANTHER JM1 PROTEIN 156 401 IPR008530 GO:0097602(PANTHER)|GO:2000060(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03950 K23343 coiled-coil domain-containing protein 22