AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03957 ATGAAGCAACATTGGATGGTTAGGGCACTCTCAAAAACCCTAACCCTGTTTCCAATTTCCTTTTCTTCCTCTCGGGCTTGCTCCTCCCATTCTTCGAGTTTTGCTATAAAAAATGTCACCAAATCCAACTTCGATTCGTCTCTCTCTGATCTTCGTCGTCACGTACGAGACTCTGATTTCGTGTCAATTGACTTAGAAATGACTGGAGTCACGAGCGCTCCTTGGAGGGAGTCGTTTGAGTTTGACAGATATGATGTTCGTTATCTCAAGGTAAAGGACTCCGCTGAGAAGTTTGCTGTTGTTCAGTTTGGAGTTTGTACCTTCCGATGGGACCCAACCAAGCAGTCCTTCATTGCCCACCCGCACAACTTTTACATATTTCCAAGGCAAGAAGTTGGAGGTGATGCTAGATCTTATGAGTTCCTGTGCCAGACATCCTCAATTGATTTCTTGGCAAAGTACCAATTTGATTTCAATGTGTGTGTAAAAGAAGGAATATCTTATTTATCCAGAGAACTAGAAGATGAAGCTAGATCGCAATTACATTCAGCACATGAAGATGAATTACCAGAGTCACCATGTGCAATGAAAGCAATTAAAGATGTCCCACTTGTCAGAATGGCAGATATTCTTTTTGTTGAGAGAATGAAAAACAAACTCAATGAATGGCATGATGACCTGTTACAGGTTAGAAATGGAGGGTCAAGCAGGATTGTTAAAGACTCTAATGCTTCAATTGATCAATTTGAGACCATCTTCTTTAGGATGCGACCAGCTATCAAACTTAATGGATTTACTTCCCGCCAACTAAGGTTGATTAAGTCGATTGTAGAAAAGAGCTTCAAGGATTTAGCTTACATCCGTGTAAATGGTGATTCATGTTCTCAACAAATTATTGTCTACATAGACTCCAGACGGGACCTAGAGTTGCTTATGAAAGAGGTAAAAGAAAGTCTCTGTAAGGAATCAGAGATGAAAATTGGAGCTGCCATTGGGTTCCGCCATGTAATTGACCTCCTTTCCTCTGAGCAAAAGCTAATTGTTGGACACAATTGCTTTCTTGATATTGCACATGTTTGTAGAAAGTTCTTGGGTCCTCTTCCTTCAAATCTTGAAGAATATGTAACCCTAGTTCATAAAAACTTCCCTTACATAATCGATACAAAGATCCTTCTGAATGCAAGTAATATTTTGCAATTAAAGATGAAGAAAAGTAGCACATCACTCCCCAAAGCTTTTGCCATCATCTGTCCACATATTGCTTCTGCTTCTGGATTGGCTCATACCTCTTCTGTTGCAGTGGAGGTTCAAGTTGATGATATGCGATCATCAAACTGGAACTCAGGAGCTAAACATGAGGCTGGTTACGATGCTTTCATGACAGGCTGCATTTTTGCTCAATCATGCAAACATCTTGACATCGATTTCACCAATTCTCATTCTTCAAATCTAAATCTAAATCTAATCAAACAAAACAAGCTTCACAACTACATCAATCTTCTATACCTCAGCTGGAGCAGTGGAGACATAGTCAACTTAAATACCGCTCAAACCACAACAGAATCTTCAGTTTTTAAAATCCAACAACCCAAAATTCCCTTTCAAAACATCGCCTTAATATGGGGGTTCTCATCGAAACTCAAGGCAAGGGCAATAAAGGAAATTTTGTGTAAAGTTTTTGGGTTGACTTCCGTTACATCCGTCTACCATTTGGATAAGACTGCTGTGTTTGTCCAGTTTAGCAACCCCGAATTGGTTTCTGAATTTTTGGAAATGAAATCGAGTTTAGAGAAGAAGAAGAATGATGCAATTTACGTTTTCCACCCGCTTTCAGAGCTTCTAGAAGGCGGACACACATGTGCTGCTTCTTATGAGGCTTACAAACAAATCTGTGGATCGCCTGTTTCTAAAGTCTTGTTTGCTGATCAAGCTGAAGCAGTTGGTGTTAAGGTTGAGACCATAAAGGCTCAACAAAGTGTTTGTTTTCATAATTTGGATACCAAAAAACAAATAAACTGTCAATCAGGTTTTCCTAAAGGAGAGATGCTAGATGTTGTCTCCTGCTGA 2067 39.72 MKQHWMVRALSKTLTLFPISFSSSRACSSHSSSFAIKNVTKSNFDSSLSDLRRHVRDSDFVSIDLEMTGVTSAPWRESFEFDRYDVRYLKVKDSAEKFAVVQFGVCTFRWDPTKQSFIAHPHNFYIFPRQEVGGDARSYEFLCQTSSIDFLAKYQFDFNVCVKEGISYLSRELEDEARSQLHSAHEDELPESPCAMKAIKDVPLVRMADILFVERMKNKLNEWHDDLLQVRNGGSSRIVKDSNASIDQFETIFFRMRPAIKLNGFTSRQLRLIKSIVEKSFKDLAYIRVNGDSCSQQIIVYIDSRRDLELLMKEVKESLCKESEMKIGAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHVCRKFLGPLPSNLEEYVTLVHKNFPYIIDTKILLNASNILQLKMKKSSTSLPKAFAIICPHIASASGLAHTSSVAVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFAQSCKHLDIDFTNSHSSNLNLNLIKQNKLHNYINLLYLSWSSGDIVNLNTAQTTTESSVFKIQQPKIPFQNIALIWGFSSKLKARAIKEILCKVFGLTSVTSVYHLDKTAVFVQFSNPELVSEFLEMKSSLEKKKNDAIYVFHPLSELLEGGHTCAASYEAYKQICGSPVSKVLFADQAEAVGVKVETIKAQQSVCFHNLDTKKQINCQSGFPKGEMLDVVSC 688
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03957 688 Gene3D - 38 203 IPR036397 GO:0003676(InterPro)
Lssa7g03957 688 Gene3D - 242 517 IPR036397 GO:0003676(InterPro)
Lssa7g03957 688 SUPERFAMILY Ribonuclease H-like 36 477 IPR012337 -
Lssa7g03957 688 Pfam CAF1 family ribonuclease 39 465 IPR006941 -
Lssa7g03957 688 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 36 647 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03957 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:206744095 Lssa8g03471 Lssa-Chr8:153453428 dispersed