AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03959 ATGCCGACTTTATTTTCTCAATCAAAAAAGAGAAAAATGTTGTCGGATGTACATTTGGAGAAGATTGTGCACACGTACAACATTGACATTGCCCCCTACGAAGAAAGTCAATCATCAAGTCAATGCATGAGAAATATGTCAGATTCCATTGATTCTGTAGAAGCCATATTGAGGTATAAGTTCAATAACAGAAGTTTGTTGGAAGCAGCCCTAACGCATTCTTCATATACGGAGTCTGAGTCCTACCAACGTCTGGAACTCCTTGGTGATGCTGTTGTTGGACTTGTCATCACAATTTTTTTTTACTTGGCTTACCCTGATGTTGACCCTGCTCAAATCTCTCTCCTCCGCTCTGCCAATATTAGTACCGAAAAACTTGCACGTGTGGCGGTTCGCAACGGCCTTTACAAATATGTCCGCCACAAAACCATTCTTCTCAATGATAAGGTTAGGAAATTTTTGATTGCGGTCGAAGATGAAGATGAGATGGTGGTGCATGGTGGGCAAATGAAAGCTCCAAAGGTGCTTGCTGATATTGTTGAATCGGTTGTTGGTGCTGTTTATGTAGATTGTGGGTTCTGTTTGCAAAGCCTGTGGACGATAATTAGAGAGCTACTTGAACCGATGGTTATGCTAGATGTTCTCGAGAAACAGCCGCAGCCTATTACCATGCTATACGAGGCATGCCAAAAAGAGGGGAAATTTGTTGACATCAAGAATTGGAGGAAAGGTGAGAGAAACATTGCAAGTGTTTATGTCGACGGAAAGTTTATTGCCTCTGGTTCTTCAGAGAACAAAGAGAACGCTAAGCTTCATGCAGCTGAGGTTGCTGTATCTAAGTTAACAAGGCTAAAAAGCATTGATGTGATAAGTAGTAGTAGTAGTGTACACATGATGTATCCTGATTGTTACAAGAGTGAATGCAGCAGGGACATGGAAAATTCCATTGCAGCTGTAGAAGCCATATTGAGGTACAACTTCAAGAAGAAAAGTTTGTTGGAAGCAGCCCTGACTCATTCTTCTTACACCGAGTCTCGATCCTACCAACGTCTGGAAATCCTCGGTGATTCTGTTCTTGGACTCGCCATCACTAATTTTGTCTACTTGGCGTACCCTGATGTTGACCCTGGTCAAATCTCTCTCCTCCGCGCTGCCAATATTAGTACTGAAAAACTTGCACGCGTGGCGGTCCGCAACCGCCTTCACAAATATGTCCGCCACAAAACCATCCTTCTCAATGATAAGGTTAGGGAATTTGTGATTGCGGTCGAAGAAGAAGAAGAGATGGTGGTGCACGGTGGACAGATGAAAGCTCCAAAGGTGCTTGCTGATATTGTTGAATCGGTTGCTGGAGCTGTTTTTGAAGATTGTGATTTCAATTTGCAAATCCTGTGGGTGGTAATTAGAGAGCTACTTGAGCCAATGGTTATGTTAAATGTTCTTGAGAAACAGCCCCAACCTATTACCAACCTATATGAGGCATGCCAAAAAGAGGGGAAAATTGTTGACATAAAGAATTGGAGGAAAGGTGAAAGAAACATTGCAAGTGTTTATGTCGACGGAAAGTTTATTGCCTCTAGCTCTTCAGAGAACAAAGAGAATGCTAAGCTTCATGCAGCTGAGGTTGCTCTATCTAAGTTAACAAGGCTTAAAAGCACTGATGCAATGAGTCTACAAATGAAAGATGATTCTGGTGAAGCCACTGAGATTAAAGGTGCTAAACGAAAAATACTTGAACTTTGTAACAGGAGAAGGTGGCCAAAAGCGACTTACAGAGTTGAGCAAGAATCGGGTCCTGCACACAATAAAAGATATATAGCATCCGTGCAAATTGAACTTTCTGGTAAGATATTTTTCATGAAGGGAGAAGAGAGGTCAAAAGTCAAGGATGCCGAAAATTCTGCAGCTTCATCTATGTTTTATTCTTTACGAGAATTGGGATATTAA 1947 41.76 MPTLFSQSKKRKMLSDVHLEKIVHTYNIDIAPYEESQSSSQCMRNMSDSIDSVEAILRYKFNNRSLLEAALTHSSYTESESYQRLELLGDAVVGLVITIFFYLAYPDVDPAQISLLRSANISTEKLARVAVRNGLYKYVRHKTILLNDKVRKFLIAVEDEDEMVVHGGQMKAPKVLADIVESVVGAVYVDCGFCLQSLWTIIRELLEPMVMLDVLEKQPQPITMLYEACQKEGKFVDIKNWRKGERNIASVYVDGKFIASGSSENKENAKLHAAEVAVSKLTRLKSIDVISSSSSVHMMYPDCYKSECSRDMENSIAAVEAILRYNFKKKSLLEAALTHSSYTESRSYQRLEILGDSVLGLAITNFVYLAYPDVDPGQISLLRAANISTEKLARVAVRNRLHKYVRHKTILLNDKVREFVIAVEEEEEMVVHGGQMKAPKVLADIVESVAGAVFEDCDFNLQILWVVIRELLEPMVMLNVLEKQPQPITNLYEACQKEGKIVDIKNWRKGERNIASVYVDGKFIASSSSENKENAKLHAAEVALSKLTRLKSTDAMSLQMKDDSGEATEIKGAKRKILELCNRRRWPKATYRVEQESGPAHNKRYIASVQIELSGKIFFMKGEERSKVKDAENSAASSMFYSLRELGY 648
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03959 648 ProSiteProfiles Ribonuclease III family domain profile. 316 458 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 SMART DRBM-3 221 282 IPR014720 -
Lssa7g03959 648 SMART DRBM-3 573 644 IPR014720 -
Lssa7g03959 648 SMART DRBM-3 487 548 IPR014720 -
Lssa7g03959 648 SUPERFAMILY dsRNA-binding domain-like 174 295 - -
Lssa7g03959 648 CDD RIBOc 331 476 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 Gene3D Ribonuclease III domain 37 212 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 Gene3D Ribonuclease III domain 305 479 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 572 645 IPR014720 -
Lssa7g03959 648 FunFam Endoribonuclease dicer-like 1 310 479 - -
Lssa7g03959 648 Pfam Double-stranded RNA binding motif 573 639 IPR014720 -
Lssa7g03959 648 Pfam Double-stranded RNA binding motif 221 281 IPR014720 -
Lssa7g03959 648 Pfam Double-stranded RNA binding motif 487 547 IPR014720 -
Lssa7g03959 648 PANTHER DICER-RELATED 310 625 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Lssa7g03959 648 Pfam Ribonuclease III domain 83 192 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 Pfam Ribonuclease III domain 349 457 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 SUPERFAMILY RNase III domain-like 313 475 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 207 283 IPR014720 -
Lssa7g03959 648 SUPERFAMILY RNase III domain-like 48 209 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 Gene3D - 579 645 - -
Lssa7g03959 648 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 473 549 IPR014720 -
Lssa7g03959 648 SMART riboneu5 65 211 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 SMART riboneu5 331 481 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 ProSiteProfiles Ribonuclease III family domain profile. 50 192 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 CDD RIBOc 65 210 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Lssa7g03959 648 FunFam Endoribonuclease dicer-like 1 44 213 - -
Lssa7g03959 648 SUPERFAMILY dsRNA-binding domain-like 571 646 - -
Lssa7g03959 648 Gene3D - 482 558 - -
Lssa7g03959 648 Gene3D - 216 292 - -
Lssa7g03959 648 SUPERFAMILY dsRNA-binding domain-like 440 550 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03959 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:169914214 Lssa7g03959 Lssa-Chr7:206784706 dispersed
Lssa Lssa-Chr7:170028627 Lssa7g03959 Lssa-Chr7:206784706 dispersed
Lssa Lssa-Chr7:206784706 Lssa8g02576 Lssa-Chr8:109425764 dispersed
Lssa Lssa-Chr3:20100075 Lssa7g03959 Lssa-Chr7:206784706 transposed
Lssa Lssa-Chr7:196554043 Lssa7g03959 Lssa-Chr7:206784706 transposed
Lssa Lssa-Chr5:275748611 Lssa7g03959 Lssa-Chr7:206784706 wgd