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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03965 ATGTCTTCCTCTGCGTTTTCTACACATGGCGCCACACTAGCTCCTGAACAAAGGAAGGCCTTTGGTGATTCAAATAACTCAGATTTTTTCCATAACAAGAAGGACCATGTATCAATGAGCTGTCCTAACAACGGAAGGCTACTATCCAAGGATAGAATCCAATGTAAAGCACTAGAGGTCCAAAGCCACCACACTTTCTTGAAAGGAGAAAAATTTCAACTTGAAGATGTGATTGAGGCACAGCAATTTGATAGAGATACCCTCAGTGCCATATTTGAAGTGGCACGTGAAATGGAAACAATTGAGAAGAAGTCACAATCACATGGAAGTCAGCTTTTGAATGGTTATCTGATGGCTACTCTCTTTTACGAGCCTTCAACAAGAACCAGGCTTTCGTTTGAGTCAGCAATGAAGCGCTTAGGTGGCGAAGTTTTAACAACAGAAAATGCACGCGAATTCTCTTCTGCTGCAAAGGGAGAAACACTTGAAGATTCTATCAGAACGGTGGAAGGGTATTCGGATATAATTGTGATGAGGCATTTTGAAAGTGGTGCTGCCAGAAGAGCAGCCATGACAGCTAACATTCCTGTTATCAATGCTGGGGATGGTCCAGGTCAGCATCCGACTCAGGCTCTTCTTGATGTGTACACCATTGAAAGAGAGATTGGAAAGCTGGATGGAATCAAAGTCGGACTTGTTGGGGATCTTGCAAATGGTCGAACAGTTCGCTCTCTTGCATATCTTTTAGCCAAATACAATGATGTCAAGATCTACTTTGTCTCACCAGAAGTTGTAAAGATGAAGGAGGACATCAAAGAGTACTTAACATTAAAGGGAGTTGAATGGGAAGAAAGTGCAGATTTGAAGGAAGTGGCTTCGAAATGTGATGTGGTGTATCAGACTCGCATCCAGAAGGAACGTTTTGGAGAGAGAAGCGATCTTTATGAGGAAGCTCGTGGGAAATACATTATTGATAGAGAGGTGTTGGGTGTCATGCAGAAACATGCCATTGTCATGCATCCTCTCCCAAGGCTTGATGAGATAACCGTGGATGTAGATGGGGACCCAAGGGCTGCTTATTTTAGACAAGCTAAAAATGGACTCTACATTAGAATGGCTTTGCTCAAGCTCTTACTTGTTGGTTGGTGA 1149 42.91 MSSSAFSTHGATLAPEQRKAFGDSNNSDFFHNKKDHVSMSCPNNGRLLSKDRIQCKALEVQSHHTFLKGEKFQLEDVIEAQQFDRDTLSAIFEVAREMETIEKKSQSHGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDSIRTVEGYSDIIVMRHFESGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKIYFVSPEVVKMKEDIKEYLTLKGVEWEESADLKEVASKCDVVYQTRIQKERFGERSDLYEEARGKYIIDREVLGVMQKHAIVMHPLPRLDEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLVGW 382
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03965 382 MobiDBLite consensus disorder prediction 1 26 - -
Lssa7g03965 382 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 76 219 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 FunFam Aspartate carbamoyltransferase 76 210 - -
Lssa7g03965 382 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 344 367 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 122 141 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 334 343 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 207 218 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 122 129 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 PRINTS Aspartate carbamoyltransferase signature 338 343 - -
Lssa7g03965 382 PRINTS Aspartate carbamoyltransferase signature 360 374 - -
Lssa7g03965 382 PRINTS Aspartate carbamoyltransferase signature 152 161 - -
Lssa7g03965 382 PRINTS Aspartate carbamoyltransferase signature 112 134 - -
Lssa7g03965 382 PRINTS Aspartate carbamoyltransferase signature 206 223 - -
Lssa7g03965 382 PRINTS Aspartate carbamoyltransferase signature 298 307 - -
Lssa7g03965 382 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 226 377 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 Gene3D Aspartate-ornithine carbamoyltransferase 207 366 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 FunFam Aspartate carbamoyltransferase 2 211 366 - -
Lssa7g03965 382 NCBIfam aspartate carbamoyltransferase 76 379 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Lssa7g03965 382 Hamap Aspartate carbamoyltransferase [pyrB]. 74 381 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Lssa7g03965 382 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 68 379 - -
Lssa7g03965 382 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 72 379 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Lssa7g03965 382 Gene3D Aspartate-ornithine carbamoyltransferase 77 375 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03965 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
127159 Lssa5g00115 Lssa7g03965
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:207075190 Lssa9g00483 Lssa-Chr9:14424046 dispersed
Lssa Lssa-Chr3:181470104 Lssa7g03965 Lssa-Chr7:207075190 transposed
Lssa Lssa-Chr3:314577858 Lssa7g03965 Lssa-Chr7:207075190 transposed
Lssa Lssa-Chr3:314578445 Lssa7g03965 Lssa-Chr7:207075190 transposed
Lssa Lssa-Chr9:91877503 Lssa7g03965 Lssa-Chr7:207075190 transposed
Lssa Lssa-Chr9:185766608 Lssa7g03965 Lssa-Chr7:207075190 transposed
Lssa Lssa-Chr5:6598106 Lssa7g03965 Lssa-Chr7:207075190 wgd