AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03967 ATGGACGCCCAGAGGGTCGCTCTTATGGCAAAACCAAAAGATATCTCTCGGACGAAATCCAGTGCTCACGACGAATTACACAGCTTCAGGTCGTGGCTCCGGTGGATGTGCGTCGATCAATCCAACTGTTGGACGTTTTGCCTCTCTTGGCTAGTTTTCATCGTCTTCGCCATCGTCATCCCTGTTCTCTCCCATTTTTACCTCGCCTGTAGTGATTGCGATAATCGCCACGCGAGGCCTTATGATACTCTTGTTCAGTTGTCTCTCAGCAGCATTGCGACACTTTCCTTTGTTTGCCTCTCCCAGTTCGTTAGAATTTATGGACTTCGGAGGTTTCTCTTCTTCGATAAGCTTTGTAATGAAAGCGAAACCGTTCGCAGGGGTTATACTGAACAGCTCAATAGCTCGCTGAAAATAGTGTTCATATTTGTGGCGCCATGTTTCACAGCTGAGGCTGCATATAAGATCTGGTGGTATAGTTCAGGCGCCACCGCTATTCCTTTCTTGGGTAATGCTATCGTGAGCGACGCCGTAGCGTGCACCTTGGAGCTCTGTTCCTGGCTTTACAGAACCGTGGTGTTTTTCCTGGTGTGCGTCCTTTTCCGCCTCATCTGCCATCTACAAATCCTCCGCCTCCAAGATTTTGCTCAGGTCTTCCATGTGGAGTCTGATGTGGAATCTGTATTGAGGGAACACCTTAGGATCAGAAGGCATCTACGCATCATCAGTCACCGATTCAGAGTCTTTATACTTTGGGCACTCATCCTTGTGACTGTCAGTCAATTTGCATCGCTTCTTGATACTACCCGCTCCACAGCAGATCTCAGCATCTTCAAAACCGGTGAACTTGCGCTTGTTTCGGTGAGCTTACTTGCTGGGCTAATGATACTACTAAGAAGTGCGACGAGGATCACACACAAGGCTCTTGGGGTGACATGTCTGGCGACTAAGTGGCACGTATGTGCAACCATCGAGTCATATGATCCACCAGATGTAGACATGGAAACGCCACCTACGGCTATGGGTGTTATGGGAAACCAGGTGTTCAGGCGAGATGCATCATCATCATCATCCGACAATGAGGATGTTGGTAGTGAAGATGAGCTAGACAATGATAAACTCATACCTGCATATGCTTACAGTACCATCTCATTTCAGAAAAGGCAAGCTTTAGTGACTTATTTTGAGAACAACAGAGCTGGGATAACAGTGTTTGGATTTATGCTGGATAGGACTACTTTGCACACTATAGTGATGATAGAGATGTCATTGGTGTTGTGGTTGCTTGGAAAGACTGTTGGTATCTCTTAA 1311 46.91 MDAQRVALMAKPKDISRTKSSAHDELHSFRSWLRWMCVDQSNCWTFCLSWLVFIVFAIVIPVLSHFYLACSDCDNRHARPYDTLVQLSLSSIATLSFVCLSQFVRIYGLRRFLFFDKLCNESETVRRGYTEQLNSSLKIVFIFVAPCFTAEAAYKIWWYSSGATAIPFLGNAIVSDAVACTLELCSWLYRTVVFFLVCVLFRLICHLQILRLQDFAQVFHVESDVESVLREHLRIRRHLRIISHRFRVFILWALILVTVSQFASLLDTTRSTADLSIFKTGELALVSVSLLAGLMILLRSATRITHKALGVTCLATKWHVCATIESYDPPDVDMETPPTAMGVMGNQVFRRDASSSSSDNEDVGSEDELDNDKLIPAYAYSTISFQKRQALVTYFENNRAGITVFGFMLDRTTLHTIVMIEMSLVLWLLGKTVGIS 436
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03967 436 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 12 435 IPR021924 -
Lssa7g03967 436 Pfam Protein of unknown function (DUF3537) 24 420 IPR021924 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03967 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
128155 Lssa7g03967 Lssa9g03370
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:133514153 Lssa7g03967 Lssa-Chr7:207236705 dispersed
Lssa Lssa-Chr7:18633460 Lssa7g03967 Lssa-Chr7:207236705 dispersed
Lssa Lssa-Chr7:207236705 Lssa9g03370 Lssa-Chr9:164955347 dispersed
Lssa Lssa-Chr7:207236705 Lssa1g04414 Lssa-Chr1:238904976 transposed