AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03972 ATGAAAGTAAGTAAATTCCGTGGTTGTGGTTATTTTGAGAAGGTAAAGAGATCAGTAGTTGAAGAAGAAGAAGAAGAAGAAATGGGTCCTCCCTCGGGTGAAAACAATGTGGTGGTTTCATCAAACATTAAGCTTGAAAGGCTTCTTAGCATGAAAGGAGGCAAAGGCGAAACCAGTTACGCCAACAACTCTCAAGCCCAGGCAAAGCATGCTCGCTCAATGCTACACCTTTTGAAGGAAACACTCGACGGTGTTCACCTGAACTCGCCGGAAATACCTTTTGTGGTGGCGGATCTTGGTTGCTCCAGCGGAAGCAACACCATATTCATCGTCAACGTCATCATCCAACATATCATCAAGCGTTACGAGGCATCCGGACACTCGGATCTACCCGAGTTCTCTGCTTTCTTCGCCGACCTTCCTTCCAATGACTTCAACACTCTCTTCCAGCTCCTCCCGCCGCTGGCCAACCAGGATGTCGGTAGCATGGAAGAGTGTCTTGCCTCCACGGGCCACCGCTCTTTCTTTGCTGCCGGTGTCCCTGGCTCCTTCTACCGCCGGTTGTTTCCCGCAAAATCAATTGATGTTTTCTACTCGGCGTTTTCCTTGCATTGGCTCTCTCAGGTGCCAGAAATTGTACTGGAGAAATCATCGACGACATACAACAAAGGAAAGATATTTATTCACGGTGCAAATAAAAGCACTGCAAATGCATATCGGAGACAATTCCAGACGGATCTTGCAGCATTTCTAAAGATGAGATCCAAAGAAATGAAAAAGGGTGGGTCAATGTTTATTGCTCTACTGGGTCGGACGTCAGAGGATCCCACTGACCAGGGTGGGGCAGGCTTACTATTCGGGACCCATTTTCAGGATGCATGGAATGATCTTGTCCAAGAGGGACTAATAACGAGTGAGAAGCGAGATGATTTCAACATTCCGGTGTATGCCCCAAGCTTACAAGACTTCAAGGAGGTGGTGGAAGCGAACGGGTCGTTTAGCATAAAGAAGCTGGAGGTATTCCAAGGAGGGAGCCCGTTGGTGGTCAACCGGCCAGATGATGCGGCGGAGGTGGGTAGGGCTCTAGCCAACAGCTGCAGGAGTGTCAGTGGGGTTCTGGTGGACGCTCACATCGGAGATAAGCTTGGGGACGAGCTCTTTTTGCGGGTGGCTAACCGGGCTACAAACAAAGCCGAGGAGATTCTGGAAAACCTTCAGTTTTTCCATATTGTAGCCTCTCTTTCTCTTAAATAA 1254 48.8 MKVSKFRGCGYFEKVKRSVVEEEEEEEMGPPSGENNVVVSSNIKLERLLSMKGGKGETSYANNSQAQAKHARSMLHLLKETLDGVHLNSPEIPFVVADLGCSSGSNTIFIVNVIIQHIIKRYEASGHSDLPEFSAFFADLPSNDFNTLFQLLPPLANQDVGSMEECLASTGHRSFFAAGVPGSFYRRLFPAKSIDVFYSAFSLHWLSQVPEIVLEKSSTTYNKGKIFIHGANKSTANAYRRQFQTDLAAFLKMRSKEMKKGGSMFIALLGRTSEDPTDQGGAGLLFGTHFQDAWNDLVQEGLITSEKRDDFNIPVYAPSLQDFKEVVEANGSFSIKKLEVFQGGSPLVVNRPDDAAEVGRALANSCRSVSGVLVDAHIGDKLGDELFLRVANRATNKAEEILENLQFFHIVASLSLK 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03972 417 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 415 IPR029063 -
Lssa7g03972 417 Gene3D Vaccinia Virus protein VP39 63 344 IPR029063 -
Lssa7g03972 417 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 49 413 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Lssa7g03972 417 Pfam SAM dependent carboxyl methyltransferase 92 414 IPR005299 GO:0008168(InterPro)
Lssa7g03972 417 Gene3D - 49 399 IPR042086 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03972 K18848 indole-3-acetate O-methyltransferase [EC:2.1.1.278]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:36788450 Lssa7g03972 Lssa-Chr7:207538896 dispersed
Lssa Lssa-Chr7:80845908 Lssa7g03972 Lssa-Chr7:207538896 dispersed