Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03974	ATGAGCGTCGTAGATAAAGAAAGCATCGAAGTGATCGCGCAGAGCATCGGCGTTGGAAATTTGTCGCCGGATGTCTTGCCTTCTCTAGCCGCCGACATCGAATACCGTGTTCGCGAGATTATGCAGGAGGCTATAAAATGTATGCGGCATGCAAAGCGAACTGCTATGACTTCAGATGATGTGGATACTGCTCTTGATCTAAGAAAAATGGAGCCAATATATGTTGCATCTGGAAATTCTTTGCGATTCAAAAGAGCTGCCAGACATAAAGATTTATTTTACCTTGATGAAAAGGATGTAGAATTTAGAGAGGTGATTGAAGCCCCCCTCCCAAAAGCACCTTTAGATACTGCAGTTGTGAACCACTGGTTGGCTATCGAAGGCGTACAGCCTGCTATTCCCGAGAACCCTCCACTAGAAGCACTTTTGACTCCAGTTGATAATAAGAACAAAGAAGATGGGATTGGGACTGGGGACAATAATAATAAAAGTCCTGTGAAACATGTGCTATCGATAGAGCTTCAGCTTTACTTTGAAAAGATCACAGACCTGACTGTAACCCGGTCAAACTCAGTCATCTTTAAGAAAGCACTGCTGAGTTTGGCGAGGGATGCAGGACTCCATCCTTTGGTTCCTTATTTCATATATTTTGTTGCTGAAGAGGTGACCCGTAATTTGAACAACTTCCAGCTTCTTTTTGCTTTGATGAGGCTTGTGCGGAGCCTTGTACAGAATCCACACCTGCACATGGAACCGTATCTGATCCAGCTCATGCCATCTGTGATGACGTGTCTTGTTGCAAAAAGCCTAGGAGGAGATAATAATAACCACTGGGAACTCAGAAACTTTACAGCCAACCTGGTGGCTTCCATATGCAGAAGGTTTGGTCATGGGTATCATAATCTTCAGTTACGTGTCACCAGGACACTTGTTGATGCTTTCATGGACCCTGCAAAAGCATTGACCCAACATTATGGTGCTATCAAAGGGATTACTGCCCTTGGCTCAAGCGTGGTGCGTCTGCTTTTGCTACCAAATCTTGATTTGTATTTACAGTTTATACAACCAGAAATGCACCTTCACAACAAGAATGCCAATGAGGTCCATGGGGCCTTGATGTGTGCTGCTGGTTTATGTGTTTACAATCAGCTTAAGATGATTCCCAATCTGCTTTCTCCACCAACACATACCAATGGAAAACTCCTCAATCCAACAAATAAACGCAAGGCCGGGGGAAACAACTTGATGATGGAACAGGCAGTTAAAAAGGCAGCAACAGGTGAGAGTTTGGTGAAGGTGGAGATGCAAGGGGGTGGAAGTGGATTTTCGATAACTCGAGGGGGGTCTTCTGATGTATTACCAACAAGGTTTATGGGTAATGAGAATATCCCAGGGAGCAGTGCGAGTGCGAGTGCAAGTATGAGGAGGGATAGGTTTGGTGCTAATATACAAACATCATCACTGGCTGTGTCACGTGCATGGAAGAAGGAAGTAAATGCTGGACATTTGCTTCCAAAACTATTTCATCTTTTTGGTGAAAGCATGCTTCCCTTTGTACCTTCCCCAGAATTGTGTAATATATTCTTATGA	1590	44.03	MSVVDKESIEVIAQSIGVGNLSPDVLPSLAADIEYRVREIMQEAIKCMRHAKRTAMTSDDVDTALDLRKMEPIYVASGNSLRFKRAARHKDLFYLDEKDVEFREVIEAPLPKAPLDTAVVNHWLAIEGVQPAIPENPPLEALLTPVDNKNKEDGIGTGDNNNKSPVKHVLSIELQLYFEKITDLTVTRSNSVIFKKALLSLARDAGLHPLVPYFIYFVAEEVTRNLNNFQLLFALMRLVRSLVQNPHLHMEPYLIQLMPSVMTCLVAKSLGGDNNNHWELRNFTANLVASICRRFGHGYHNLQLRVTRTLVDAFMDPAKALTQHYGAIKGITALGSSVVRLLLLPNLDLYLQFIQPEMHLHNKNANEVHGALMCAAGLCVYNQLKMIPNLLSPPTHTNGKLLNPTNKRKAGGNNLMMEQAVKKAATGESLVKVEMQGGGSGFSITRGGSSDVLPTRFMGNENIPGSSASASASMRRDRFGANIQTSSLAVSRAWKKEVNAGHLLPKLFHLFGESMLPFVPSPELCNIFL	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03974	529	CDD	TAF6C	167	375	IPR011442	GO:0006367(InterPro)
	Lssa7g03974	529	Pfam	TATA box binding protein associated factor (TAF)	1	65	IPR004823	-
	Lssa7g03974	529	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	3	522	IPR037796	GO:0000124(InterPro)\|GO:0003713(PANTHER)\|GO:0005669(InterPro)\|GO:0005669(PANTHER)\|GO:0006367(InterPro)\|GO:0016251(InterPro)\|GO:0016251(PANTHER)\|GO:0046695(InterPro)\|GO:0051123(PANTHER)
	Lssa7g03974	529	Gene3D	-	166	369	IPR046344	GO:0006367(InterPro)
	Lssa7g03974	529	SUPERFAMILY	Histone-fold	1	66	IPR009072	GO:0046982(InterPro)
	Lssa7g03974	529	SMART	TAF-cls	2	68	IPR004823	-
	Lssa7g03974	529	FunFam	Transcription initiation factor TFIID subunit 6	167	362	-	-
	Lssa7g03974	529	Gene3D	Histone, subunit A	1	66	IPR009072	GO:0046982(InterPro)
	Lssa7g03974	529	SUPERFAMILY	ARM repeat	222	383	IPR016024	-
	Lssa7g03974	529	FunFam	transcription initiation factor TFIID subunit 6	1	66	-	-
	Lssa7g03974	529	Pfam	TAF6 C-terminal HEAT repeat domain	166	347	IPR011442	GO:0006367(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03974	K03131	transcription initiation factor TFIID subunit 6

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr5:274261018	Lssa7g03974	Lssa-Chr7:207684684	wgd