AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03975 ATGGCCACACGAACGCTTCTTCAGTTCGCCACCAACGTAACCCAGTTACCGTCGTCTTCCTCCTCAATCTCCACCGGATGTCCGCTTTCTCCCTTCTTCTTGAAAGCATGTGACTCACCTAGGGCTCGTGTACGTCGTCGTTCCGCCGTATGCTGTTCTTTTGCCTCAATGGAGTCTGCAAAGATTAAGGTTGTCGGTGTCGGCGGCGGCGGCAACAATGCCGTTAACCGCATGATTGGTAGCGGGCTGCAGGGTGTTGATTTTTACGCCATAAACACGGATTCTCAAGCGCTTTTCCAGTCTGTTGCAGAGAACCCAATTCAGATCGGAGAGCTTTTGACTCGTGGACTTGGTACGGGTGGGAATCCGATGTTGGGGGAACAGGCTGCAGAGGAATCAAAGGAAGCAATCGGAAATGCTCTCAAGGGATCAGATCTTGTGTTCATAACAGCAGGAATGGGAGGTGGGACAGGATCTGGAGCTGCTCCAGTGGTGGCCCAGATAGCAAAAGAAGCAGGATATCTCACCGTTGGTGTTGTAACCTACCCCTTCAGCTTTGAAGGACGCAAAAGATCAGCTTTGGAAGCTATTGAGAAGCTGCAAAGGAATGTGGACACACTTATAGTAATCCCAAATGACCGCTTACTGGATATTGCTGATGAGCAGACACCCCTTCAGGATGCTTTTCTTCTTGCTGATGATGTACTCCGTCAAGGCGTTCAAGGCATTTCAGATATAATCACGATACCTGGGCTTGTGAACGTGGATTTTGCAGATGTGAAAGCAGTGATGAAAGACTCTGGAACTGCAATGCTTGGTGTGGGAGTTTCCTCTAGTAAAAACCGAGCTGAAGAAGCAGCTGAACAAGCAACACTTGCTCCTCTCATCGGTTCTTCAATCCAATCTGCCACAGGAGTGGTTTACAATATCACTGGAGGGAAGGACATAACTCTTCAAGAAGTCAATAGGGTGTCTCAGGTTGTAACAAGTCTAGCAGATCCTTCAGCCAACATTATATTTGGGGCTGTTGTGGATGAGAGATATAATGGGGAGATTCATGTCACGATTGTTGCCACTGGATTTGCACAGTCGTTTCAGAAATCACTCCTGGCTGATCCCAGAGGAGCAAAGCTTGTTGATAGAAATCAAGAATCCACACAACCTTCTATCTCTCCTAAATCCTCCTTCACCACACAAAATCCTACCCCATCTCGCCCTAGGAAAATCTTCTTTTGA 1236 47.82 MATRTLLQFATNVTQLPSSSSSISTGCPLSPFFLKACDSPRARVRRRSAVCCSFASMESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALFQSVAENPIQIGELLTRGLGTGGNPMLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSALEAIEKLQRNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLADPRGAKLVDRNQESTQPSISPKSSFTTQNPTPSRPRKIFF 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03975 411 ProSitePatterns FtsZ protein signature 2. 145 166 IPR020805 GO:0005525(InterPro)
Lssa7g03975 411 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lssa7g03975 411 Hamap Cell division protein FtsZ [ftsZ]. 57 375 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lssa7g03975 411 SMART Tubulin-4 61 251 IPR003008 GO:0005525(InterPro)
Lssa7g03975 411 MobiDBLite consensus disorder prediction 380 411 - -
Lssa7g03975 411 CDD FtsZ-type1 77 360 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lssa7g03975 411 NCBIfam cell division protein FtsZ 56 369 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Lssa7g03975 411 ProSitePatterns FtsZ protein signature 1. 92 126 IPR020805 GO:0005525(InterPro)
Lssa7g03975 411 Gene3D Tubulin-FtsZ, GTPase domain 60 223 IPR036525 -
Lssa7g03975 411 FunFam Cell division protein FtsZ 1, chloroplastic 224 361 - -
Lssa7g03975 411 SUPERFAMILY Tubulin C-terminal domain-like 253 368 IPR008280 -
Lssa7g03975 411 Pfam Tubulin-FtsZ family, GTPase domain 61 219 IPR003008 GO:0005525(InterPro)
Lssa7g03975 411 FunFam Cell division protein FtsZ 1, chloroplastic 54 266 - -
Lssa7g03975 411 Gene3D - 224 362 IPR037103 -
Lssa7g03975 411 Pfam FtsZ family, C-terminal domain 268 361 IPR024757 -
Lssa7g03975 411 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 48 387 IPR045061 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Lssa7g03975 411 SMART Tubulin-C-4 253 370 IPR018316 -
Lssa7g03975 411 SUPERFAMILY Tubulin nucleotide-binding domain-like 60 254 IPR036525 -
Lssa7g03975 411 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 154 160 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lssa7g03975 411 PRINTS Cell division protein FtsZ signature 258 279 IPR003008 GO:0005525(InterPro)
Lssa7g03975 411 PRINTS Cell division protein FtsZ signature 174 195 IPR003008 GO:0005525(InterPro)
Lssa7g03975 411 PRINTS Cell division protein FtsZ signature 235 257 IPR003008 GO:0005525(InterPro)
Lssa7g03975 411 PRINTS Cell division protein FtsZ signature 146 166 IPR003008 GO:0005525(InterPro)
Lssa7g03975 411 MobiDBLite consensus disorder prediction 380 405 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03975 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:207688282 Lssa9g00788 Lssa-Chr9:22686697 dispersed