AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03989 ATGGGATTTTCATCTGCTGCTGCTTGTGTAGGTCTTCATAATTTGCCATGGAACTTCCACTCCCATCGTCAAAGGGTTTTCAAGATTCTTTGTTCGAGTGCTAAAGACACACATCAGAGTCCGATTACACTTGAGCTTTCAAACCCCAATAAAGCACTCAGGGCTTCGTCTTCCCAGATCGAAGCAGTTCAATTTGATGAAAGAAGTAGCCCCTTTGAGGTTGCAAAGCTGTTGGGATGTACTTCATGGTCAGGGGCTGGACCAGGCCTGATGGATGCTGCAACTCGGGGTGCTCTTGAAGCAGGAAAGCCGGTTGGTGGATTCAAGATTGCTAAAGAAGCAGGGGAATGGACAGCAACCAATTTTCATCCGTATCTTCCTTCTCATGCTTACCTTACATGCAGGTTTTTTTCTGCAAGAAAGCATGGGTTGGTGGATGCAGCGGTTAGAAGTAGTAAAGGGGAGAAGACGGGTGTGATTGTACTACCAGGAGGGATTGGCACTCTGGATGAGGCTTTTGAGATTCTTGCACTCATCCAGTTAGAGAGGATAGGTTCAGCACTTCCTGTTCCTTTTGTTTTGATGAATTATGACTCCTTTTATTCCAAGCTTTTACAGTTTCTGGAGGTATGTCAAGATTGGGGGACTGTTTCCAAAGGAGAGGTTTCCTCCCTTTTCAAAGTATGTAATAATAACTCTGAAGCACTCGCATATCTTGCACAATTTTATAATCAATGCTAA 741 44.26 MGFSSAAACVGLHNLPWNFHSHRQRVFKILCSSAKDTHQSPITLELSNPNKALRASSSQIEAVQFDERSSPFEVAKLLGCTSWSGAGPGLMDAATRGALEAGKPVGGFKIAKEAGEWTATNFHPYLPSHAYLTCRFFSARKHGLVDAAVRSSKGEKTGVIVLPGGIGTLDEAFEILALIQLERIGSALPVPFVLMNYDSFYSKLLQFLEVCQDWGTVSKGEVSSLFKVCNNNSEALAYLAQFYNQC 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03989 246 SUPERFAMILY MCP-YpsA-like 79 239 - -
Lssa7g03989 246 Gene3D - 20 243 - -
Lssa7g03989 246 PANTHER EXPRESSED PROTEIN 72 240 - -
Lssa7g03989 246 Pfam Possible lysine decarboxylase 91 238 IPR031100 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03989 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:199178131 Lssa7g03989 Lssa-Chr7:208723258 dispersed
Lssa Lssa-Chr7:208723258 Lssa8g01447 Lssa-Chr8:55567818 dispersed
Lssa Lssa-Chr7:208723258 Lssa9g04472 Lssa-Chr9:225248444 transposed