Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03997	ATGGATGTTGTAGCAATTGAAGCCTCGGTGTGGAACACTTCATTATATAACACACTCCCCAAACCTTCTCTTTTCAGATTATCAAGACGAAGGTGCCCTAAAATCTTACATTGTACAGCGGGAGCTATTAGATTCAGCGAGAGGGTTATTCTCCGAAACATTGTTGATTCGAGATTTCCAAGAAATACTAGTTATAGTGTTGTTCGAGACGACAGAGGATTGAGATCTGTTTGGATTAAAAGTAGTAGTAGCGTGGACAACCATTCTACAGCCCCAAGTGTGGATTTTGATTTTCTTCAAATTTTGGTAAAGAGGGGATTGGTTTTGGCGGCGGTGTGCTGTGGGGTTTTAGTGTTGGGATGCAGAGGGGTTCTTGCTGCCGAAGGAGTCTTGAATGGGGGATTTGTGGGTTCCGGTTTAGAGCAGATTAAGTTGTCATTGACGAACTCTCTGCCCAAGGTTTTGATGGTTCTCAAGGTGTTGAAGGAACAAGGTCTAATTTTGGCTGCTCTTTTTGGCCTCTCTGCATTTTTCTCCATGGCTGAGACTTCAATCACTACTCTGTGGCCTTGGAAGGTCAGGGAGTTAGCTGAGAAAGAGTCTGAGAATGGTGTGTTCAAAATGCTCCGCAATGATGTTACTCGGTTCTTGACAACCATACTTATTGGCACAACCGTTGTCAATATTGGAGCAACCGCTCTTGTCACTGAAGCAGCAACAACAATATTCGGTGAAGCAGGTGTGAGTGCAGCTACAGGAGTAATGACGGTTGCTGTTTTGCTACTCACTGAAATAACTCCAAAAAGTATAGCTGTTCATAATGCCACTGAGGTTGCAAGATTTGTGGTCAGGCCGATTGCATGGCTTTCCTTAGTCTTATATCCGGTTGGAAGGGTTGTAACATGTCTCTCGATGGGAATGCTCAAGTTGCTTGGTCTTAAAGGAAGAAGTGAACCGTATGTGACTGAGGATGAACTGAAGTTGATGTTGCGAGGAGCTGAACTAAGTGGGGCCATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTTTAGAAATAAAAGACACATACGTTCGAGAGGTTATGACACCTTTGGTTGATGTTGTTGCCAGTGATTCCAGTGCAACACTTGTCGATTTCCACACCTTGTGGTTAACTCATCAGTATTCAAGCTCTCTTGCTCACAGGGTACCAGTTTTTGAGCAACGTGTTGATAATATAGTGGGCATTGCATATGCAATGGATCTACTAGACTATGTTCAAAAGGGAGATCTACTAGAAAGTACAAGTGTGGGGGATATGGCTCATAAACCTGCTTATTTTGTGCCTGATTCGATGTCAGTGTGGAATCTTCTTAGAGAATTTCGAATCAGGAAGGTGCATATGGCTGTTGTCCTGAATGAATATGGTGGAACAGTTGGGATTGTAACTCTGGAAGATGTGGTTGAAGAAATTGTTGGTGAAATTTTTGATGAAAATGATTCAAAAGAGGAAATAGAGAAAAAGACTGGGTATATTGTAATGAGGGCTGAAGGAATTTATGATGTGGATGCAAATACATCCATTGACCAGCTTTCTGAAGATCTCAACATAAAGATGCCAGAGGGACATCAATATGAAACAGTATCGGGGTTTGTGTGTGAGGCATTTGGATATATCCCGAGAACAGGGGAAAGTATAAAACTGGTACTTGACAAGGAGGAAGAGCATGATGAGTATAATACAGAGGATGATCAAAATCAAAATCAAAATCAAAAAGATAGAGAAAAAGAAAAGAAGCAAGTATTTCAAATAGAGATCTTGGCAGGAAATGCAAGAAAGGTTGGTGCAGTGAGGTTTGAACGGGTAACAGCACATGATGAGGGGTCAGATTCATCATCATCATTGTTGGAGTTGGAAAGAAACAGCGACACAAAGGAAATGAAGAAGGTAGTTCCAAAAATCATGAAAAGGAAGTTCGGGGGTGATGTCAGTGATGATGAAACATGTAGGAGTGAGGAGGGGGATGTAATCCCACAACATCAACTCAAACAGGGGGAATGA	2043	41.9	MDVVAIEASVWNTSLYNTLPKPSLFRLSRRRCPKILHCTAGAIRFSERVILRNIVDSRFPRNTSYSVVRDDRGLRSVWIKSSSSVDNHSTAPSVDFDFLQILVKRGLVLAAVCCGVLVLGCRGVLAAEGVLNGGFVGSGLEQIKLSLTNSLPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATTIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARFVVRPIAWLSLVLYPVGRVVTCLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLVDFHTLWLTHQYSSSLAHRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLESTSVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIEKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKLVLDKEEEHDEYNTEDDQNQNQNQKDREKEKKQVFQIEILAGNARKVGAVRFERVTAHDEGSDSSSSLLELERNSDTKEMKKVVPKIMKRKFGGDVSDDETCRSEEGDVIPQHQLKQGE	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03997	680	MobiDBLite	consensus disorder prediction	633	673	-	-
	Lssa7g03997	680	Pfam	CBS domain	431	486	IPR000644	-
	Lssa7g03997	680	SMART	CorC-HlyC-2	507	617	IPR005170	-
	Lssa7g03997	680	PANTHER	HEMOLYSIN-RELATED	130	633	-	-
	Lssa7g03997	680	Pfam	Cyclin M transmembrane N-terminal domain	166	343	IPR002550	-
	Lssa7g03997	680	CDD	CBS-pair-CorC-HlyC-assoc	358	483	IPR044751	-
	Lssa7g03997	680	Pfam	Transporter associated domain	509	615	IPR005170	-
	Lssa7g03997	680	ProSiteProfiles	CNNM transmembrane domain profile.	157	343	IPR002550	-
	Lssa7g03997	680	SUPERFAMILY	FAD-binding-transporter-associated domain-like	505	623	IPR036318	GO:0050660(InterPro)
	Lssa7g03997	680	SUPERFAMILY	CBS-domain pair	345	489	IPR046342	-
	Lssa7g03997	680	Gene3D	-	504	601	IPR016169	-
	Lssa7g03997	680	MobiDBLite	consensus disorder prediction	618	680	-	-
	Lssa7g03997	680	MobiDBLite	consensus disorder prediction	568	591	-	-
	Lssa7g03997	680	Gene3D	-	337	497	IPR046342	-
	Lssa7g03997	680	ProSiteProfiles	CBS domain profile.	434	492	IPR000644	-
	Lssa7g03997	680	FunFam	Magnesium-cobalt efflux protein CorC	339	494	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03997	K03699	magnesium and cobalt exporter, CNNM family

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr5:304885793	Lssa7g03997	Lssa-Chr7:209551341	dispersed
	Lssa	Lssa-Chr7:175745360	Lssa7g03997	Lssa-Chr7:209551341	dispersed
	Lssa	Lssa-Chr7:209551341	Lssa8g00741	Lssa-Chr8:25865589	dispersed