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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa8g01681 ATGCCAACTCTAACGAAGCTATACACGATGCAAGAAGCTTCAGAGCACAATTCCGCAGGCGATTGCTGGGTTGTTATCGATGGCAAGGTGTACGATGTGTCATCGTATCTGGAAGAACACCCAGGTGGAGATGATGTCCTCCTTCAGGTTACTGGGAAAGATGCTACCGATGAATTTGAAGATGCGGGGCATAGCAAAACTGCAAGGGAACTAATGGAAAGTTTTTTTGTTGGGGAGTTGGACACGTCAGACATCCCTCAGCTTGAAATTGTCTCTGAGAAGCAAGAAAATTACATTTTTGACCTTACTAAGCAATACTGGGCTGTTCCATTAGCAGCCATTGGCATATCGGTGGTTGTCACCTTTTTGTACTTGCGCAAGAAGTAA 387 44.96 MPTLTKLYTMQEASEHNSAGDCWVVIDGKVYDVSSYLEEHPGGDDVLLQVTGKDATDEFEDAGHSKTARELMESFFVGELDTSDIPQLEIVSEKQENYIFDLTKQYWAVPLAAIGISVVVTFLYLRKK 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa8g01681 128 Gene3D - 3 86 IPR036400 -
Lssa8g01681 128 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lssa8g01681 128 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Lssa8g01681 128 SMART Cyt-b5-2 8 81 IPR001199 -
Lssa8g01681 128 FunFam Cytochrome b5 type B 3 85 - -
Lssa8g01681 128 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lssa8g01681 128 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
Lssa8g01681 128 PANTHER CYTOCHROME B5 4 124 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lssa8g01681 128 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lssa8g01681 128 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lssa8g01681 128 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lssa8g01681 128 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa8g01681 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3934439 Lssa Lssa8g01681 Lssa-Chr8:68908173 Lssa8g03217 Lssa-Chr8:137547092
3957861 Lssa Lssa8g01681 Lssa-Chr8:68908173 Lssa8g00190 Lssa-Chr8:6019664
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g02707 . 164 192 NADPH P450 reductases gene family AT5G17770 68.966 1.45e-06 47.8
Lssa9g01985 ACH 1 133 NADPH P450 reductases gene family AT5G53560 50.746 8.32e-41 130.0
Lssa9g01984 ACH 1 133 NADPH P450 reductases gene family AT5G53560 67.669 4.53e-66 195.0
Lssa8g03453 . 2 120 NADPH P450 reductases gene family AT1G60660 65.546 1.01e-52 160.0
Lssa8g03217 . 5 133 NADPH P450 reductases gene family AT2G32720 74.419 5.18e-74 214.0
Lssa8g02171 ACH 39 281 NADPH P450 reductases gene family AT5G17770 41.406 9.45e-65 203.0
Lssa8g01681 . 1 134 NADPH P450 reductases gene family AT1G26340 66.418 1.37e-61 183.0
Lssa8g00190 ACH 1 133 NADPH P450 reductases gene family AT5G53560 70.677 6.78e-70 204.0
Lssa8g04176 . 199 225 NADPH P450 reductases gene family AT5G17770 62.5 5.42e-06 42.0
Lssa8g03763 . 38 273 NADPH P450 reductases gene family AT5G17770 39.535 6.79e-51 179.0
Lssa8g04530 . 199 281 NADPH P450 reductases gene family AT5G17770 44.444 1.80e-16 73.2
Lssa8g00941 . 199 228 NADPH P450 reductases gene family AT5G17770 63.333 3.70e-06 42.7
Lssa7g03232 . 38 273 NADPH P450 reductases gene family AT5G17770 39.3 3.07e-49 174.0
Lssa7g02236 . 199 222 NADPH P450 reductases gene family AT5G17770 75.0 3.45e-07 44.3
Lssa6g02028 . 6 130 NADPH P450 reductases gene family AT2G32720 42.754 4.13e-40 129.0
Lssa6g03074 . 88 118 NADPH P450 reductases gene family AT5G17770 80.645 7.13e-10 55.8
Lssa5g03891 . 199 281 NADPH P450 reductases gene family AT5G17770 58.621 4.51e-27 101.0
Lssa5g04881 . 30 281 NADPH P450 reductases gene family AT5G17770 82.54 3.24e-159 442.0
Lssa5g03041 ACH 39 281 NADPH P450 reductases gene family AT5G17770 39.062 3.67e-60 191.0
Lssa4g01126 . 199 281 NADPH P450 reductases gene family AT5G17770 48.193 1.72e-17 74.7
Lssa4g00809 . 30 87 NADPH P450 reductases gene family AT5G17770 72.414 9.66e-23 86.3
Lssa4g05314 . 199 221 NADPH P450 reductases gene family AT5G17770 73.913 6.49e-06 42.0
Lssa4g02712 . 185 281 NADPH P450 reductases gene family AT5G17770 50.0 5.44e-26 95.1
Lssa4g05989 . 31 281 NADPH P450 reductases gene family AT5G17770 82.47 2.46e-159 443.0
Lssa4g00808 . 158 281 NADPH P450 reductases gene family AT5G17770 65.323 1.80e-52 164.0
Lssa3g04814 . 1 137 NADPH P450 reductases gene family AT5G48810 49.635 5.14e-49 152.0
Lssa3g00622 . 57 87 NADPH P450 reductases gene family AT5G17770 83.871 4.32e-10 53.1
Lssa2g00836 . 164 192 NADPH P450 reductases gene family AT5G17770 68.966 1.21e-06 48.1
Lssa2g04459 ACH 1 132 NADPH P450 reductases gene family AT5G53560 70.455 8.00e-66 194.0
Lssa1g03789 . 199 259 NADPH P450 reductases gene family AT5G17770 47.692 4.12e-11 57.8
Lssa1g03541 . 199 221 NADPH P450 reductases gene family AT5G17770 73.913 6.43e-06 42.0
Lssa1g00284 . 199 281 NADPH P450 reductases gene family AT5G17770 59.77 5.63e-28 103.0
Lssa1g02718 . 199 281 NADPH P450 reductases gene family AT5G17770 46.988 8.35e-17 72.8
Lssa1g00670 . 1 136 NADPH P450 reductases gene family AT5G48810 48.551 3.48e-46 145.0
Lssa1g03734 . 3 83 NADPH P450 reductases gene family AT5G53560 34.568 6.73e-14 64.7