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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa8g01682 ATGGAATCGAAAAAAGACAGGGGTGAAGTGAGGATTCATGAAAATTTAGATGAACTTAGCACAGATTTGGCTGATTACGTGGCAGAATTATCAGAGGCATCTGTGAAAGAACGTGGCGTTTTCGCCATTGCTTTATCTGGAGGTTCTCTCATTAGCTTAATGAGGAATCTATGTGGAGCTCCTTATAACAAAACCGTAGATTGGTCTAAATGGTATATATTTTGGGCCGATGAACGTGTGGTTGCCAAAAATCATGTCGATAGTAACTATAAACTTGCGAAAGATCATCTTTTGTCTAAGTTACCTATTGTTCCGAGCCATGTACATTCCATCAATGATTCCCTCACAGCGGAAGAAGCTGCAACCGAATACGAGTTTGTAATCAGACAACTTGTGAGGACACGTGTCATCAATGTGTCTGAAGTCAGCGACTGCCCGAAGTTTGACCTAATCCTACTTGGCATGGGCCCAGATGGACACGTGGCGTCTTTGTTCCCTAACCATTCGGTTCTTGAAGAAAAAAACGAGTGGGTGACATTCATCACCACTTCACCTAAACCTCCGCCCGAAAGAATCACCTTCACACTGCCCGTTATCAACTCTGCCGCCAATGTGGTGGTGGTGGTGACAGGTGGCGGAAAGGCGGAAGCTGCCAGGCTGGCGATAGATGATGTGGGACCCGAGTGTGAGGTGTTGCCAGCTAGGATGATTGAACCGGTTGTTGGGAAGTTGGTTTGGTTTTTGGATAGCCAAGCGGGTTCAAAGCTTAAGAGCTTTTCTTAA 783 45.59 MESKKDRGEVRIHENLDELSTDLADYVAELSEASVKERGVFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAATEYEFVIRQLVRTRVINVSEVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVVVVVTGGGKAEAARLAIDDVGPECEVLPARMIEPVVGKLVWFLDSQAGSKLKSFS 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa8g01682 260 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3 257 IPR039104 -
Lssa8g01682 260 Coils Coil 16 36 - -
Lssa8g01682 260 Gene3D - 6 259 - -
Lssa8g01682 260 CDD 6PGL 17 248 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Lssa8g01682 260 SUPERFAMILY NagB-RpiA-CoA transferase-like 10 257 IPR037171 -
Lssa8g01682 260 FunFam Probable 6-phosphogluconolactonase 5 257 - -
Lssa8g01682 260 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 16 246 IPR006148 GO:0005975(InterPro)
Lssa8g01682 260 NCBIfam 6-phosphogluconolactonase 12 256 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa8g01682 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3933392 Lssa Lssa8g00189 Lssa-Chr8:6018168 Lssa8g01682 Lssa-Chr8:68995561