Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa8g01688	ATGGACTTTTCTCCGGCTGCTCGCCGGACGAGCAGAAAGCCGACAAAGTCAGAGCTCTACTCAACGTTTGTAGTTCATAGCGATGAGGAAGATGACGATGCCCAAACTCAAAAGAACCCTAAAAAGGTAGATGCAGGAGATATATACGCTACAATGCTATGTAAAGACGATGACGATCCAAACGACGACGAATCACTACCTCCTCTCCTCAAGCACCTGCCGAAAGACTTCGGAGCCGATGTAGATTCCGACGACGATGGAGAAAGCATCTCCGGCACAATGATTGTAAAACCTGATCGTAGACGCGTGCAATCTCCGTATAGGAGAGAGGAATCCGACGAAGAAGAAGATGAAGATGAAGAAGGCACTGGTTTTGGGACGTTTGTGGTGAGATCGAAGGATACAGAGAGTGAGTCAGTATCCGGGACATTTGTGCGGCGGACTAGTGGCGGCAGTGGCGGGATGTCAACAATGAGTAGGGCGGTTGCTAGTATGCAGGCGGTAGGAGAAGGATTTGGGAGGCCAAGGAAAGGGAGTGCTACGCCAACATCATCTTCACAGGATGAAGAAGGAGGGTATTCACGGAAGCAGACTAGTAAAATGTCTTCGGGTTCGATTGCGGATAGTGTTACGAGAGAAGATCCATCTACCAAGTACGAATTGCTTCATGAACTTGGAAAAGGTTCTTATGGGTCTGTTTACAAAGCTCGTGATTTAAAAACTTCAGAAATGGTTGCAATCAAAGTGATATCATTATCTGAAGGGGAAGAAGGGTATGAAGAAATTCGTGGTGAAATAGAGATGTTACAGCAATGCAGTCATCCTAATGTTGTTCGTTATTTAGGAAGCTATCAGGGTGAGGAGTACCTTTGGATTGTAATGGAGTATTGTGGTGGAGGAAGTGTTGCTGATTTAATGAATGTTACTGATGAGGCTTTAGAGGAGTACCAAATAGCATATATATGTACTGAAGCATTGAAGGGTTTATCCTATTTGCACTCCATTTTCAAAGTGCATCGCGATATTAAGGGTGGTAATATTTTATTAACTGAACAAGGAGAGGTGAAGTTGGGTGATTTTGGTGTTGCTGCACAACTAACAAGAACAATGTCCAAACGTAATACGTTTATTGGTACTCCCCATTGGATGGCTCCAGAGGTTATCCAGGAAAGTAGATATGATGGGAAGGTAGATGTGTGGGCCCTTGGGGTGTCTGCAATAGAAATGGCTGAGGGCCTTCCTCCAAGATCAAATGTGCATCCAATGAGGGTGTTATTTATGATTTCCATTGAACCAGCTCCTATGCTTGAAGATAAAGAGAAATGGTCTCTTGTGTTCCATGATTTCATTGCAAAATGCCTTACAAAAGACCCTCGTATACGCCCCACTGCTTCTGAGCTGTTAAAGCATAAATTCATAGAAAAATGCAAATCTGGAGCTTCTGCAATGTTGCCCAAGCTTGAGAAGGCAAAGATAAATAGGGCTGCTATGGCTTTGGAAGCAGAACATGTTGCTTCAGAGACCATACCTGGATACGGGACACTTGGAGCAAAAATGAATGAAGAATATGGAGATACTGTTCCATCTAAGCCTCATCAAGTGCCTAATGGAGGAGTACCTCTTGTGGGTGGTTCAGTAAAACCTGATGCTCTAGAAGAGGAAAGAGAAGGTGATTTTGGAAGCGTGATAATCCATGGTGGAGTTGATATAGAGAAAACAGCTGCTAAAACACCATCGGCTCAAATGACTAAAGAGCCCTCATCCTCGTCAGCACATGGTCAAATCTTGTCAATGGCTGATCCTGGAGAAGATTCAGTTAGTCCATGGTTGACCAAGAAAGTTACTACAGTTGAAACACCGGGTACCGAACCCACATCACAAGCTACGGGAACCAATGGTGGTGTCATCACGGGGACAACTAAGAATGAAGGTGTTAATCGCAAAGCACTAGACAAGCTGTGGTCGATATATGCTGCTGGGAACACAGTGCCGATTCCATTTTTAAGGGCAACGGATATATCTCCAATTGCATTGTTGTCTGAGAATGTGCTTGGAAGTCAACATTTGGATAATGTTGGAAATGTCGCTGTTGAAGCATTACAAGACCTTTTCACTAGCGATGGACAGTCTAATAAGAAGAACCGAAGACAGAATGAGTTGCCTCTTCCTCCAAGTGTCTACCAAAGACTCACTTCAAGTCCAACATTGATGAATCTCGCACAAGCTTTATCATATCATAAAATGTGCTATGAAGAGATGCCGTTGCAGGAACTACAGGCAACTCAAGAACAACAAACGATTCAGAACCTTTGTGATACCCTTCGAACTATTTTAAGGTTATAG	2343	43.75	MDFSPAARRTSRKPTKSELYSTFVVHSDEEDDDAQTQKNPKKVDAGDIYATMLCKDDDDPNDDESLPPLLKHLPKDFGADVDSDDDGESISGTMIVKPDRRRVQSPYRREESDEEEDEDEEGTGFGTFVVRSKDTESESVSGTFVRRTSGGSGGMSTMSRAVASMQAVGEGFGRPRKGSATPTSSSQDEEGGYSRKQTSKMSSGSIADSVTREDPSTKYELLHELGKGSYGSVYKARDLKTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEALEEYQIAYICTEALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSNVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFIAKCLTKDPRIRPTASELLKHKFIEKCKSGASAMLPKLEKAKINRAAMALEAEHVASETIPGYGTLGAKMNEEYGDTVPSKPHQVPNGGVPLVGGSVKPDALEEEREGDFGSVIIHGGVDIEKTAAKTPSAQMTKEPSSSSAHGQILSMADPGEDSVSPWLTKKVTTVETPGTEPTSQATGTNGGVITGTTKNEGVNRKALDKLWSIYAAGNTVPIPFLRATDISPIALLSENVLGSQHLDNVGNVAVEALQDLFTSDGQSNKKNRRQNELPLPPSVYQRLTSSPTLMNLAQALSYHKMCYEEMPLQELQATQEQQTIQNLCDTLRTILRL	780

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa8g01688	780	PANTHER	SERINE-THREONINE-PROTEIN KINASE TAO	190	504	IPR050285	GO:0006468(PANTHER)\|GO:0035556(PANTHER)\|GO:0043408(PANTHER)
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	1	157	-	-
	Lssa8g01688	780	Pfam	Protein kinase domain	219	473	IPR000719	GO:0004672(InterPro)\|GO:0005524(InterPro)\|GO:0006468(InterPro)
	Lssa8g01688	780	SUPERFAMILY	Protein kinase-like (PK-like)	218	474	IPR011009	-
	Lssa8g01688	780	Gene3D	Transferase(Phosphotransferase) domain 1	215	508	-	-
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	576	595	-	-
	Lssa8g01688	780	ProSitePatterns	Protein kinases ATP-binding region signature.	225	248	IPR017441	GO:0005524(InterPro)
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	64	80	-	-
	Lssa8g01688	780	ProSiteProfiles	Protein kinase domain profile.	219	473	IPR000719	GO:0004672(InterPro)\|GO:0005524(InterPro)\|GO:0006468(InterPro)
	Lssa8g01688	780	FunFam	serine-threonine-protein kinase dst1 isoform X1	216	507	-	-
	Lssa8g01688	780	FunFam	Aurora kinase A	211	300	-	-
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	170	215	-	-
	Lssa8g01688	780	SMART	serkin-6	219	473	IPR000719	GO:0004672(InterPro)\|GO:0005524(InterPro)\|GO:0006468(InterPro)
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	178	212	-	-
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	23	40	-	-
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lssa8g01688	780	CDD	STKc-MAP4K3-like	218	473	-	-
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	616	641	-	-
	Lssa8g01688	780	MobiDBLite	consensus disorder prediction	130	157	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa8g01688	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	3916797	Lssa	Lssa3g04345	Lssa-Chr3:269565527	Lssa8g01688	Lssa-Chr8:69752682
	3932942	Lssa	Lssa7g03557	Lssa-Chr7:187708029	Lssa8g01688	Lssa-Chr8:69752682
	3934445	Lssa	Lssa8g01688	Lssa-Chr8:69752682	Lssa9g03122	Lssa-Chr9:151781523
	3938783	Lssa	Lssa9g02818	Lssa-Chr9:115207554	Lssa8g01688	Lssa-Chr8:69752682
	3957865	Lssa	Lssa8g01688	Lssa-Chr8:69752682	Lssa5g03983	Lssa-Chr5:281894921

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lssa9g03122	.	513	573	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	43.548	3.15e-07	44.3
	Lssa9g02818	.	453	536	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	47.674	3.08e-19	79.0
	Lssa8g01688	.	5	836	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	60.495	0.0	906.0
	Lssa7g03557	.	1	686	MAP Kinase Kinase Kinase Kinase Protein gene family	AT3G15220	54.533	0.0	660.0
	Lssa6g01819	.	406	440	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	65.714	2.97e-08	52.8
	Lssa5g03983	.	1	683	MAP Kinase Kinase Kinase Kinase Protein gene family	AT3G15220	60.309	0.0	795.0
	Lssa5g00303	.	4	683	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G79640	53.411	0.0	653.0
	Lssa5g02254	.	5	476	MAP Kinase Kinase Kinase Kinase Protein gene family	AT4G14480	50.195	9.05e-159	460.0
	Lssa4g06115	ACH	6	673	MAP Kinase Kinase Kinase Kinase Protein gene family	AT5G14720	62.049	0.0	828.0
	Lssa3g04345	.	454	499	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	47.561	1.57e-16	73.6
	Lssa3g04271	.	287	382	MAP Kinase Kinase Kinase Kinase Protein gene family	AT4G10730	67.708	1.94e-36	128.0
	Lssa3g03421	ACH	6	674	MAP Kinase Kinase Kinase Kinase Protein gene family	AT5G14720	63.28	0.0	845.0
	Lssa3g00463	.	40	709	MAP Kinase Kinase Kinase Kinase Protein gene family	AT4G10730	64.698	0.0	905.0
	Lssa2g02935	ACH	6	673	MAP Kinase Kinase Kinase Kinase Protein gene family	AT5G14720	62.009	0.0	852.0
	Lssa2g03426	.	499	539	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G69220	48.78	6.41e-07	48.9
	Lssa1g01178	.	4	683	MAP Kinase Kinase Kinase Kinase Protein gene family	AT1G79640	56.395	0.0	734.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Lssa	Pkinase	1.6e-69	CL0016		PK	STE_STE20-Pl