AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa8g01697 ATGTCACTCCCATTACCAATGTTCCCCACAAAAAAGGAGCTGCCACATCAGAATTACGCAATTACCCCTGGATGTCTTGAATTGGTTGTTTGTTGGTATTCATCTCATTCCACCCTTGGCCTTGGACCCTTTTGCCCTTGCGTTTGTAGAACCGAAATGGTTGGGGCATATCATCTATTCATAGATGACAACAAACATTTATACATGAGAATAAAATTTATTTTTATTTTTTCTTTTCAGGGCTCAAACTTAGATAGCAATGCCAAAATGTGGCGTCTTGTTGCAGATCTCATGAATGATCTTGGAATGCTGATGGACCTTGTTTCTCCATTGTTCCCTTCGGCATTTATATTCATTGTCTGCATAGGAAGCTTGTCAAGATCTTTCACTGGTGTTGCCAGTGGAGCAACTAGAGCTGCTTTGACCCAACATTTTGCTCTTCAGAATAACACAGCAGATATATCTGCAAAGGAAGGAAGCCAAGAGACAGTTGCAACAATGATTGGAATGGCTTTAGGAATGCTTCTTGCACACATTACAATGGGACACTCCACTATTATATGGTTCTCTTTTTTGTCCCTCACAATGTTCCACATGTATGCTAATTACAAAGCTGTTAGGTGCCTTAATCTCACTACATTAAACTGTGAAAGAAGCTCAATTCTTTTGTTGCATTTCATGGAGACTGGTGGAGTTTTGTCTCCAAAAGAGGTCTCTGTGTTGGAGCATGTGTTGCCTTTATGGATGAGTAGTTGGAGTTCAAAAAATACAAAATCTCTGTATACACGTGTATGTTTAGGTATCAGGGTTTCCTCACTCAACACCTTGGAAATGAAGGAGCTATTAAGTTATGCTGGATCTGAGTATGAAAAAGGAAAATACTTGTTACTTGAGAATAAAGGAATTGTGAGCATTGTTGTGCATAAAGATTCAAGTAGTGGAGATGTGATTAAGGGATTCATGCATGCTCTTGTTATGGCGAATCTGTTAGATGATAAGAAAAGCCAAATGTGGATGAACAAACATTATCAAGACTTTATTTTCAAGCTTCAATCATGTGGTTGGAAAACAGAGCGACTTTTGTCATCATCAATCGTATGGAGGGCAAACTGGACACATAAAAAGATAAACTAG 1134 38.71 MSLPLPMFPTKKELPHQNYAITPGCLELVVCWYSSHSTLGLGPFCPCVCRTEMVGAYHLFIDDNKHLYMRIKFIFIFSFQGSNLDSNAKMWRLVADLMNDLGMLMDLVSPLFPSAFIFIVCIGSLSRSFTGVASGATRAALTQHFALQNNTADISAKEGSQETVATMIGMALGMLLAHITMGHSTIIWFSFLSLTMFHMYANYKAVRCLNLTTLNCERSSILLLHFMETGGVLSPKEVSVLEHVLPLWMSSWSSKNTKSLYTRVCLGIRVSSLNTLEMKELLSYAGSEYEKGKYLLLENKGIVSIVVHKDSSSGDVIKGFMHALVMANLLDDKKSQMWMNKHYQDFIFKLQSCGWKTERLLSSSIVWRANWTHKKIN 377
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa8g01697 377 PANTHER RUS1 FAMILY PROTEIN C16ORF58 76 371 IPR006968 -
Lssa8g01697 377 Pfam Vitamin B6 photo-protection and homoeostasis 71 229 IPR054549 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa8g01697 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr8:70042968 Lssa8g03306 Lssa-Chr8:142575901 transposed