AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa8g01706 | ATGTCCAACGAAAAGGAGAGAGAAACTCATGTTTACATGGCGAAGCTCGCCGAACAAGCCGAGCGTTACGAAGAGATGGTTGAAAGTATGAAGAGTGTTGCAAAACTTAATGTTGAACTTACTGTTGAAGAACGCAACCTACTTTCAGTTGGATACAAGAATGTGATTGGTGCAAGAAGGGCATCTTGGCGTATCATGTCATCAATTGAACAAAAAGAGGAATCAAAAGGGAATGAAAGCAATGTGAACTTGATCAAGGGATATCGCAAAAAGGTTGAAGATGAACTTGCTAAAATTTGCAGTGACATTCTTGAAATCATTGATAAGCATCTCATACCCTCATCTGGATCAGGAGAAGCTACTGTTTTCTACTACAAGATGAAAGGCGACTACTTCAGGTACCTTGCAGAGTTCAAGACAGACCAAGAGAGGAAGGATGCTTCTGAAATGTCATTGAAGGGCTATGAGGCACATGCACTTTTACTCCTTGGTAGTGTTTGGTATGAATGTATGATGGAATCAAGGAAGGAATGGAATGCTGCTTCTGCTGCTGCAAATTCAGATCTTCCTTCAACCCACCCAATTCGACTAGGCCTTGCCCTCAATTTCTCAGTGTTTTATTATGAGATTATGAATTCTCCCGAAAGGGCATGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCTGAGCTGGACTCATTAAGTGAAGAATCTTACAAGGACAGCACCTTGATTATGCAGCTCTTGAGAGATAATCTCACTCTTTGGACCTCTGATTTGCCCGAAGATGGAGGTACTTCATACCCTTCTCTTCTCCCATATTTATCATTTGACTGTTTGACTTTGACTTATGTCAATGAGACAAAAATTGCAATTTTCTTTCCCACCCAAAATGTGGGTGATGAAAACCACCCAAAAGGGGAAGAATCTAAATCAGCTGAAACAGAGGTAGGTAGGACTTGA | 966 | 41.1 | MSNEKERETHVYMAKLAEQAERYEEMVESMKSVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVNLIKGYRKKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDASEMSLKGYEAHALLLLGSVWYECMMESRKEWNAASAAANSDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGTSYPSLLPYLSFDCLTLTYVNETKIAIFFPTQNVGDENHPKGEESKSAETEVGRT | 321 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa8g01706 | 321 | PANTHER | 14-3-3 PROTEIN | 6 | 263 | IPR000308 | GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER) | |
| Lssa8g01706 | 321 | Pfam | 14-3-3 protein | 13 | 157 | IPR023410 | - | |
| Lssa8g01706 | 321 | Pfam | 14-3-3 protein | 169 | 258 | IPR023410 | - | |
| Lssa8g01706 | 321 | SMART | 1433-4 | 7 | 271 | IPR023410 | - | |
| Lssa8g01706 | 321 | Coils | Coil | 218 | 238 | - | - | |
| Lssa8g01706 | 321 | Gene3D | - | 1 | 267 | IPR036815 | - | |
| Lssa8g01706 | 321 | MobiDBLite | consensus disorder prediction | 303 | 321 | - | - | |
| Lssa8g01706 | 321 | SUPERFAMILY | 14-3-3 protein | 6 | 260 | IPR036815 | - | |
| Lssa8g01706 | 321 | PRINTS | 14-3-3 protein zeta signature | 88 | 112 | IPR000308 | - | |
| Lssa8g01706 | 321 | PRINTS | 14-3-3 protein zeta signature | 39 | 68 | IPR000308 | - | |
| Lssa8g01706 | 321 | PRINTS | 14-3-3 protein zeta signature | 119 | 141 | IPR000308 | - | |
| Lssa8g01706 | 321 | MobiDBLite | consensus disorder prediction | 302 | 321 | - | - | |
| Lssa8g01706 | 321 | ProSitePatterns | 14-3-3 proteins signature 2. | 240 | 259 | IPR023409 | - | |
| Lssa8g01706 | 321 | ProSitePatterns | 14-3-3 proteins signature 1. | 45 | 55 | IPR023409 | - | |
| Lssa8g01706 | 321 | Coils | Coil | 13 | 33 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa8g01706 | K06630 | 14-3-3 protein epsilon |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 126534 | Lssa3g01903 | Lssa8g01706 | |
| 126823 | Lssa4g00459 | Lssa8g01706 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr4:20073686 | Lssa8g01706 | Lssa-Chr8:70561986 | dispersed | |
| Lssa | Lssa-Chr7:185416064 | Lssa8g01706 | Lssa-Chr8:70561986 | dispersed | |
| Lssa | Lssa-Chr8:70561986 | Lssa9g03640 | Lssa-Chr9:180445264 | dispersed | |
| Lssa | Lssa-Chr3:74174485 | Lssa8g01706 | Lssa-Chr8:70561986 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lssa9g03640 | ACH | 1 | 263 | 14-3-3 family | AT2G42590 | 77.186 | 2.46e-152 | 423.0 | |
| Lssa9g00040 | . | 144 | 210 | 14-3-3 family | AT5G10450 | 77.612 | 3.04e-32 | 112.0 | |
| Lssa9g02762 | . | 7 | 266 | 14-3-3 family | AT1G35160 | 83.908 | 3.29e-163 | 451.0 | |
| Lssa9g02823 | ACH | 1 | 247 | 14-3-3 family | AT5G65430 | 83.806 | 5.36e-156 | 431.0 | |
| Lssa9g03458 | . | 171 | 251 | 14-3-3 family | AT4G09000 | 55.172 | 6.22e-21 | 83.2 | |
| Lssa8g04237 | . | 218 | 263 | 14-3-3 family | AT2G42590 | 46.0 | 7.75e-07 | 43.5 | |
| Lssa8g01706 | ACH | 6 | 246 | 14-3-3 family | AT1G26480 | 79.545 | 2.22e-153 | 429.0 | |
| Lssa7g03503 | ACH | 1 | 244 | 14-3-3 family | AT2G42590 | 80.738 | 1.55e-148 | 414.0 | |
| Lssa7g02837 | . | 115 | 157 | 14-3-3 family | AT2G42590 | 52.0 | 1.58e-09 | 52.0 | |
| Lssa6g03469 | . | 7 | 266 | 14-3-3 family | AT1G35160 | 85.496 | 6.62e-166 | 458.0 | |
| Lssa6g03451 | ACH | 2 | 240 | 14-3-3 family | AT1G34760 | 73.333 | 1.38e-132 | 372.0 | |
| Lssa5g05545 | . | 197 | 263 | 14-3-3 family | AT2G42590 | 58.209 | 1.17e-19 | 79.3 | |
| Lssa4g05408 | . | 140 | 190 | 14-3-3 family | AT2G42590 | 62.745 | 8.99e-18 | 74.7 | |
| Lssa4g05212 | . | 3 | 259 | 14-3-3 family | AT3G02520 | 88.327 | 8.25e-167 | 460.0 | |
| Lssa4g05029 | . | 128 | 190 | 14-3-3 family | AT2G42590 | 61.905 | 4.00e-24 | 90.5 | |
| Lssa4g00459 | ACH | 6 | 256 | 14-3-3 family | AT1G26480 | 70.916 | 1.72e-125 | 354.0 | |
| Lssa4g04843 | ACH | 6 | 262 | 14-3-3 family | AT1G35160 | 85.659 | 3.09e-163 | 451.0 | |
| Lssa3g01296 | . | 6 | 263 | 14-3-3 family | AT2G42590 | 78.378 | 9.91e-148 | 412.0 | |
| Lssa3g01903 | ACH | 6 | 264 | 14-3-3 family | AT1G26480 | 80.309 | 9.40e-158 | 437.0 | |
| Lssa2g02116 | ACH | 2 | 256 | 14-3-3 family | AT1G78300 | 87.109 | 1.56e-163 | 451.0 | |
| Lssa1g00966 | . | 128 | 188 | 14-3-3 family | AT2G42590 | 60.656 | 5.78e-21 | 84.7 | |
| Lssa1g00145 | ACH | 3 | 259 | 14-3-3 family | AT1G78300 | 88.716 | 8.05e-168 | 462.0 | |
| Lssa1g00068 | ACH | 1 | 247 | 14-3-3 family | AT5G10450 | 83.794 | 2.98e-157 | 435.0 |