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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01731 ATGGTGATGATGGTGCTGCAAAGGAGATCGATGGTTGTGGAGGAGATCGATGGTGATGATGGTGCTACGGAGGAGGAGGAGCTTCGGGCGTGGCTGTGTGTTCGGCGTGATGTGCAGGATATGTACACGATAGTTGGTCCAAAAGGTGCCATAACCATTGTTGTTCAAGGCATGGGAATTTGGATTGTATTGAGGGAGAATATGGATGATCAGTTTATAAATGAGATGATGGAAGAATGGATAGAGGAGGATGATTATGATGATCAGAGGAAGAAGGGTATAATGGGAAAGAAGGGTTCCAGTAGTGGAGGGTTTTGCCAGGTGGAAGACTGCACAAGCGATATGAGTCGGGCCAAAACATATCATCGGAGACACAAAGTTTGTGAGGCTCATGCTAAGGCCCCAAATGTTTTTATTTGTGGAAGGCAACAGCGTTTCTGCCAGCAATGCAGCAGGTTTCACGACCTAACAGAATTTGATGATGCCAAGAGGAGTTGTCGTAGGCGCTTAGCTGGACACAATGAAAGGAGGCGCAAAACCTCATATGGAGAGACTTCAGGATGA 564 46.81 MVMMVLQRRSMVVEEIDGDDGATEEEELRAWLCVRRDVQDMYTIVGPKGAITIVVQGMGIWIVLRENMDDQFINEMMEEWIEEDDYDDQRKKGIMGKKGSSSGGFCQVEDCTSDMSRAKTYHRRHKVCEAHAKAPNVFICGRQQRFCQQCSRFHDLTEFDDAKRSCRRRLAGHNERRRKTSYGETSG 187
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01731 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 179 IPR044817 GO:0003677(InterPro)
Mimi16g01731 187 Pfam SBP domain 106 179 IPR004333 GO:0003677(InterPro)
Mimi16g01731 187 SUPERFAMILY SBT domain 105 183 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mimi16g01731 187 FunFam Squamosa promoter-binding-like protein 14 97 167 - -
Mimi16g01731 187 Gene3D - 96 167 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mimi16g01731 187 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01731 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
129584 Mimi16g01731 Mimi9g00215
421409 Mimi16g01731 Mimi16g01805
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:76522846 Mimi2g00671 Mimi-Chr2:54931948 dispersed
Mimi Mimi-Chr15:89189989 Mimi16g01731 Mimi-Chr16:76522846 transposed
Mimi Mimi-Chr16:76522846 Mimi16g01805 Mimi-Chr16:77751326 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi18g00135 ACH 107 394 SBP-box gene family AT5G43270 41.356 1.96e-56 187.0
Mimi16g01731 ACH,WGDA 46 129 SBP-box gene family AT2G33810 75.0 2.45e-43 139.0
Mimi16g01805 WGDA 46 129 SBP-box gene family AT2G33810 75.0 2.45e-43 139.0
Mimi15g01951 ACH 1 353 SBP-box gene family AT5G43270 39.623 1.76e-57 192.0
Mimi15g02070 . 42 138 SBP-box gene family AT3G15270 70.103 4.51e-43 139.0
Mimi13g00760 WGDA 17 793 SBP-box gene family AT5G18830 43.213 0.0 590.0
Mimi13g01038 . 1 927 SBP-box gene family AT3G60030 48.223 0.0 820.0
Mimi13g01732 WGDA 1 221 SBP-box gene family AT5G50670 48.661 7.09e-58 190.0
Mimi12g00183 . 1 1035 SBP-box gene family AT1G20980 48.69 0.0 894.0
Mimi12g02625 . 141 211 SBP-box gene family AT5G50670 58.333 2.60e-17 79.7
Mimi9g00215 ACH 54 129 SBP-box gene family AT2G33810 68.421 3.04e-33 119.0
Mimi8g00320 WGDA 1 215 SBP-box gene family AT5G50670 50.691 8.10e-62 201.0
Mimi8g00746 WGDA 17 801 SBP-box gene family AT5G18830 41.884 0.0 569.0
Mimi8g00771 . 17 801 SBP-box gene family AT5G18830 41.884 0.0 567.0
Mimi5g01107 . 32 255 SBP-box gene family AT2G42200 47.561 5.56e-51 172.0
Mimi3g00526 . 94 269 SBP-box gene family AT5G43270 43.889 1.35e-35 130.0
Mimi2g00671 . 37 138 SBP-box gene family AT1G53160 64.078 6.05e-40 130.0
Mimi2g00739 . 1 284 SBP-box gene family AT1G02065 48.485 1.30e-73 228.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi SBP 3.7e-31 No_clan TF SBP