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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01739 ATGGCATCCATCAACACCACCCACGGGAAATCGTCGAGGTTGACCACGTTGGCCCAGCAGCTCCGACTTTACAAGCCTGATGAAGAAACGGATTGTGCAACCACGACTCCTGTTGGTTCCGAAAGATTTACACCTAAAAAAGCCGCTGTTCTGATCTGCCTTTTTGAACAAAGCGACGGTGGCCTCCGTGTGATTCTTACTAAACGATCTTCTCGCCTCTCTACACATTCAGGTGAAGTTTCATTGCCCGGAGGGAAAGCTGAGGAAGATGATGTAGATGACGCTGACACAGCGACAAGGGAAGCTAAGGAAGAGATTGGTCTTGATCCTTCACTTGTAGATGTTGTGGCCTATCTTGAGCCTTTTTTGTCTAAGCATCTTCTGCGAGTAATCCCTGTAATTGGCATACTTTCTGATGCAAATGCATTCACTCCAACTCCTAATGTTGCTGAAGTAGATGACGTCTTTGATGCTCCCTTAGAAATGTTTCTAAAGGATGAAAACCGAAGATGCGAACAAAGAGAATGGATGGGAGAGAAGTATCTGGTTCATTATTTTGACTACGAAACAGGTGGTAAGAAATATCTAATCTGGGGTTTAACTGCTGGGATTTTGATTCGCGCTGCATCGATTGTGTACCAGAGACAACCTGATTTTGTGGAACAAAACCCCAAATTCAAGGTTCCTGGTGATTTAAACAAGGACACCATAATGCCATAA 720 44.44 MASINTTHGKSSRLTTLAQQLRLYKPDEETDCATTTPVGSERFTPKKAAVLICLFEQSDGGLRVILTKRSSRLSTHSGEVSLPGGKAEEDDVDDADTATREAKEEIGLDPSLVDVVAYLEPFLSKHLLRVIPVIGILSDANAFTPTPNVAEVDDVFDAPLEMFLKDENRRCEQREWMGEKYLVHYFDYETGGKKYLIWGLTAGILIRAASIVYQRQPDFVEQNPKFKVPGDLNKDTIMP 239
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01739 239 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 24 210 - -
Mimi16g01739 239 FunFam Nudix hydrolase 11 28 210 - -
Mimi16g01739 239 PANTHER NUDIX HYDROLASE 10 228 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
Mimi16g01739 239 Pfam NUDIX domain 47 155 IPR000086 -
Mimi16g01739 239 CDD CoAse 46 206 IPR045121 GO:0010945(InterPro)
Mimi16g01739 239 ProSiteProfiles Nudix hydrolase domain profile. 45 201 IPR000086 -
Mimi16g01739 239 SUPERFAMILY Nudix 42 205 IPR015797 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01739 K17879 peroxisomal coenzyme A diphosphatase NUDT7 [EC:3.6.1.77]
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Event-related genes

Select Gene_1 Gene_2 Event_name
421412 Mimi16g01739 Mimi16g01796
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:42826321 Mimi16g01739 Mimi-Chr16:76656876 dispersed
Mimi Mimi-Chr16:76656876 Mimi2g00687 Mimi-Chr2:57513239 dispersed
Mimi Mimi-Chr16:76656876 Mimi16g01796 Mimi-Chr16:77577832 wgd