AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01816 ATGAGCAGCACGCAGTCGTTACACTCGCTAGCCTTCAGGGTGATGCGGCTATGCCGGCCGACGTTCCATGCCGAAACCCCGCTCCGATTCGACCTTTCCGATCTCATCGTCGGCGAGGATCTATTCGACGATCCGTCCGCCGGACCTCAGCTCCGGCGTCTCATCCAATCTCAAACTGATTCCTCCACCGATCTCACCTACACTGATCGATTTCTTCTCCGTCATGATCCATCCGATGCCATGGGACTTCCCGGTATGCTCGTCCTCCCTCAGTCATTCGGTGCCATATATCTTGGAGAAACATTCTGCAGTTATATAAGCATTAACAACAGCTCCAGTTTTGAAGTGAGGGACATTATAATCAAGGCAGAAATACAAACAGAAAGGCAGAGAATACTGCTTTTAGACACAACTAAAACACCAGTTGAAACAATAAGAGCAGGAGGACGCTATGATTTCATTGTTGAACATGATGTTAAGGAGCTTGGCGCACACACTCTGGTCTGCACCGCGCAATACAGTGATGGTGATGCTGAGCGCAAGTATCTCCCACAGTATTTCAAATTTATGGTTTCAAATCCTCTTTCTGTCAGGACAAAGGTAACAGAAATGACATACTTGGAGGCTTGTTTAGAAAATAATACAAAATCAAATCTGTACATGGACCAAGTGGATTTTGAGCCTACCTCAAACTGGAGTGCAATATTACTAAGAGCTGATAGTCACCATTCTGAAAAGAGTGTTACGACAAGAGAGATATTCAAGCCACCCATTCTGATTAAATCTGGAGGTGGAATTCACAACTATCTCTACCAGCTAAAATCATTACTGGATGGATCTGCACCAATGAAATTTGAAGGGAGTAATGTTCTTGGAAAACTTCAGATAACATGGCGAACAAATTTGGGTGAACCTGGACGCTTGCAAACACAACAGATTGTTGGTAACCTCTTTACACAAAGGGAGATTGAACTGAAAGCAGCAAAGGTGCCATCTGTCATCATCTTAGAAAAACCCTTTACAGTATACTTGAGTCTTACAAACCTAACTGAGAACAAGCTTGGCCCATTTGAAGTTTTTATTTCTCGGAGTGACAGCCAAGAGGAAAAAAGTCTTCTTGGTACGGGGCTTAAAAAGATCGCTTTACCTCAGGTGGAGGCATTCAGATCTCTGGATTTTCAAATGAACCTAATTCCTTTGGAAGCTGGAATGCAGAAAATTAGTGGCATTACAGTGTTTAATACGACAGAGAAGAAAAGTTATGATCCAGTGCCCGACATCGAGTCCCTCATTACCGTGATAGTTATGTCTTCAAGAAAAAGGAAAAGTGAAAGGATTGCAATCAAATCTTTAAGTAAGTTTACAAACACAGAAGAAGATCCCATCGACTTAGACACCACTGATCAAAGTAAACAAGGTAGGAAGAAGAACATGAAGCAAAAAGATCCCGGAAGTGATTCTGACTTAGAAGAGGAGAAAATTCGTGTCAAAATGAGGAAAAAAGGGATCGCGCTAACAAAGGATGTTAGGTTGTCTTTTACAACGTTGTGGTTACATTGCTTTGCTAATGGTGGTGTTTTTAGAGATGTCGCATATTATGACTCTGATGAATTTGTTGGAAAAGACGTAGATAACGAAGACCGTGGAAGAAAAAGAGGTAAGTTAGGACTGTCGGACACTGAAAGTGATGAAGATGAAATCCTCATTAATTTGAAAAGAAAGGTTCAGAGACAAGGAAAAAAAGATGATGTTCCGGGCAAGAAAAGGGGACATGGAAGTAAAGGAACGGAAGGTAAAGAAATTTGGAAGTGTGAAATGAAGAAGAAAAATGGTAAAAAGAAAATGTATGCTAGTGACAGTGAAGATGCTAAAAGCCAAAAAGGTAAAGAAAAAATGTATGCTAGTGACAGTGAAGATGTTAAAGGCCAAAAAGGAAAAAAGGTCATGAGGCAAACAAGCAAAAAGGTTGATGCTACAGATGGTAGTGGGACAAAGAGGTGGATGATTCTGAACACAAGGTCTTCACCAGCTCAGTTGTTTCGATGTGTGAAACTGTTGAGGGATAACCAAAAAAGGGGAGTTATGGAAATGGGCTTTGGAAATTTGTTGAAATTTAACATGGATGGTATCCCCTCAAAGATGGCACATTTTGTGGTAGATAGGTTGAAATGCAAGAGGATGGAGATTATTTGCAGAGGAGGATGTTTGAAAATTACCCCACAATTGATTCATAAACAAATTGTGGAGAAAATAGAAAGCTCTGAGGATGAAAACACATTTGACTTTAAGATGGATTTCATAGTGTTGTTCATGGCTGTTCTTGTGGAGTGTCATAAAAATGGAAGGGTTAAAGAAGGTATTCTTAGGTATATCACATCACAGACAGATTTTTCAGAAATAGATTGGTGTGATTACATATTTGAATGCCTAAGAAGTTGCAAGATAGGGTGGGCAAGGGATGACAATAGTTCCCCCTTCAATGGTCCACTGACAATACTGACGTTAATCTATGTTGAAGGGTTTGAATGTAAGGGCATCTCTGTTGACAAAAGAATCCACCCAATTGAATTTTGGAACAAAAACCGACTAAAAATAAGGGAGGACTGGGAGATGAAACATGGAGGGTTTGGGAGAGGAAAACTAAACCAAAATTTCGTAGATGAAGGTTCGTCAGGTGAGAGGGAGGAGCCATACGAGAAAACAGAGTTGTTGGCGGGTGTGAAAAAATGTTTAGATGATTGGGGAAATTTGAAAAGCGTGCTAGAAAAAGATTTAACATATTTGATAGCAAGAGATAAGAACAACGAGGACATACAAACAGTTAGGGCTTGCTATGAGAGCCTATTGGAGAAAAAACCTAAATGGGTTAGGCAATTAGATGACGGTGAAAATGATGAAGATGGGGCTGAAAAAATAGAGCTGATTAATGCGTTTGACAGAGACACAGTGGTTGACCTAAATATAACACATCCAGATGTTGGCATTGAAGATAATCAATTTGATGGAGCAAGTTGGAGACTGGGTGTCTCGGACCTGACAGGGGCTTCTACGGGGAAAAACGCTAAAGCAGATTACACTGGTGCTGTTAGCCATTTAGATAATCCTGTGTTTCTGAGTGAAAGTGATAATGAAATCATAAAAAACGGTGGTCCGGTTGATCCTACAAAAACGTCAACCCACCTTGATAGTTCCATGGAAACAGAACAAAGTGTGAATCAGTTCTGCCTTTCGCTGTTGAATGAAGCACCGTTGCAGGACGTGCCTGGGAAAAGTAATATTAAAGAAACAAACGATCATGTCACACGAAATGAAGAAAATCGAGATGGCGAGCTGCAGGGGACGCTACACATGAAACTAACTGAGCAAATACATGGAGGGTTTCAAAATCAAGCTGCACCAGATTTGACGGAGCAGACTGTAAACCAATTTTGCCTGTCGTTGATGAATGACCCTCCAGACAACGATTTGACAGACAATTTTGATGTTGTTCAAAACAAAGTGGACGCGACAAACATAAAGAGTGTTGAGGAGGTAGTAAAAGATGTTGAAGGGAACAGAGAAGAAGCGGGTGTTAACTTAAACGAGCAACAGTCAGTGGGGTTGCTGAATTCTGGTGGTGATGGAGTTGATTTGCATGGACCCAACTGGAGTTTGGGGGTATCTCAGCATTTTATTTCACAACAGGTTGATCAAACAACAATTGACTATTGCCTTCAACAATTGAATGAGAACGCTACAAATGAAGTTGATCAACAGGGTGATGATAACATGCCCTTGGGAAAAAAAGAAAATTTAGATAACATGAAGGCGGATATTGTGGGTGGCGTGTCCAAAACTGAAGATCCACATACTGTTGGTGAAGCAAAATGGCGTGAGGTGGTTGATAAATTTGAGGCAAACAGAAAAAAACCAATTAGAGACAAAGGTATTGCCGAGGTCAACAAATCTCCATATGTGATAAGAGAAGATGAAAGTATCCTAAGCTATGTATTGTACGAGGATTCTTCAAACAAAGGGTTGTTCACCGATGGACAAAAAAATGACAAAGGGAAGCAGAAAGAAACGTTGAACGATGCAAATGATCACAGACAGAGTGCAGTGGTAAACAATCAAGTTATTGATGCATGGGTTGAAGTCCTAAATTTTGAAGAAAAATACAGATCTCCCAATTCTCCGTACAGATTGTTTTGCGGGAGTAATGTGATCATTGACGGGATGCTCAACCAAGATGATGTTGATCCCAATCAAAGAGTTGATAAGTTCGCTACAAACATGAATGGGGTGATAGCTGGAGTGATTAAGGAGAGTCCTTTTGCTAAGGACAAAGCAGATGTCAACAATCTTAAAATGTTTGATATGGTCCTCTTCCCTATACTTGAATTCAACCATTACTACTTGTTAGTCTTTGAGTTAAAGAACTGTGCGATCTCAGTAATTGATAACTTTCATGAATCAATACCACTAGTGGGGGTTAAAGATAGTGCAGACTATTACCTCAAAGATTCCCCCTGCAAAGTGAAGGAAATGTTTGTCCGTTATCTAGAGAAGATTAAACATGCAAAAACGGATGAAATACATGCAACCAAGATTCAAAAGGTGCAAATCCCATGGGCTACCAAGACTAACGCAGTTGATTGTGGAGTTTTTCTGATGCGACACATGGAAAAATTTATGGGAATCCATGAACAATTCAACTGTGGCTTCTCAACAAATGGCAAGAAAAAAAGTGCCAGCTGA 4737 40.51 MSSTQSLHSLAFRVMRLCRPTFHAETPLRFDLSDLIVGEDLFDDPSAGPQLRRLIQSQTDSSTDLTYTDRFLLRHDPSDAMGLPGMLVLPQSFGAIYLGETFCSYISINNSSSFEVRDIIIKAEIQTERQRILLLDTTKTPVETIRAGGRYDFIVEHDVKELGAHTLVCTAQYSDGDAERKYLPQYFKFMVSNPLSVRTKVTEMTYLEACLENNTKSNLYMDQVDFEPTSNWSAILLRADSHHSEKSVTTREIFKPPILIKSGGGIHNYLYQLKSLLDGSAPMKFEGSNVLGKLQITWRTNLGEPGRLQTQQIVGNLFTQREIELKAAKVPSVIILEKPFTVYLSLTNLTENKLGPFEVFISRSDSQEEKSLLGTGLKKIALPQVEAFRSLDFQMNLIPLEAGMQKISGITVFNTTEKKSYDPVPDIESLITVIVMSSRKRKSERIAIKSLSKFTNTEEDPIDLDTTDQSKQGRKKNMKQKDPGSDSDLEEEKIRVKMRKKGIALTKDVRLSFTTLWLHCFANGGVFRDVAYYDSDEFVGKDVDNEDRGRKRGKLGLSDTESDEDEILINLKRKVQRQGKKDDVPGKKRGHGSKGTEGKEIWKCEMKKKNGKKKMYASDSEDAKSQKGKEKMYASDSEDVKGQKGKKVMRQTSKKVDATDGSGTKRWMILNTRSSPAQLFRCVKLLRDNQKRGVMEMGFGNLLKFNMDGIPSKMAHFVVDRLKCKRMEIICRGGCLKITPQLIHKQIVEKIESSEDENTFDFKMDFIVLFMAVLVECHKNGRVKEGILRYITSQTDFSEIDWCDYIFECLRSCKIGWARDDNSSPFNGPLTILTLIYVEGFECKGISVDKRIHPIEFWNKNRLKIREDWEMKHGGFGRGKLNQNFVDEGSSGEREEPYEKTELLAGVKKCLDDWGNLKSVLEKDLTYLIARDKNNEDIQTVRACYESLLEKKPKWVRQLDDGENDEDGAEKIELINAFDRDTVVDLNITHPDVGIEDNQFDGASWRLGVSDLTGASTGKNAKADYTGAVSHLDNPVFLSESDNEIIKNGGPVDPTKTSTHLDSSMETEQSVNQFCLSLLNEAPLQDVPGKSNIKETNDHVTRNEENRDGELQGTLHMKLTEQIHGGFQNQAAPDLTEQTVNQFCLSLMNDPPDNDLTDNFDVVQNKVDATNIKSVEEVVKDVEGNREEAGVNLNEQQSVGLLNSGGDGVDLHGPNWSLGVSQHFISQQVDQTTIDYCLQQLNENATNEVDQQGDDNMPLGKKENLDNMKADIVGGVSKTEDPHTVGEAKWREVVDKFEANRKKPIRDKGIAEVNKSPYVIREDESILSYVLYEDSSNKGLFTDGQKNDKGKQKETLNDANDHRQSAVVNNQVIDAWVEVLNFEEKYRSPNSPYRLFCGSNVIIDGMLNQDDVDPNQRVDKFATNMNGVIAGVIKESPFAKDKADVNNLKMFDMVLFPILEFNHYYLLVFELKNCAISVIDNFHESIPLVGVKDSADYYLKDSPCKVKEMFVRYLEKIKHAKTDEIHATKIQKVQIPWATKTNAVDCGVFLMRHMEKFMGIHEQFNCGFSTNGKKKSAS 1578
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01816 1578 MobiDBLite consensus disorder prediction 459 491 - -
Mimi16g01816 1578 MobiDBLite consensus disorder prediction 612 660 - -
Mimi16g01816 1578 MobiDBLite consensus disorder prediction 612 654 - -
Mimi16g01816 1578 PANTHER UNCHARACTERIZED 1 430 IPR010378 GO:1990072(PANTHER)
Mimi16g01816 1578 SUPERFAMILY Cysteine proteinases 1348 1558 IPR038765 -
Mimi16g01816 1578 ProSiteProfiles Ubiquitin-like protease family profile. 1346 1557 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Mimi16g01816 1578 Gene3D Adenoviral Proteinase; Chain A 1317 1571 - -
Mimi16g01816 1578 Pfam Protein of unknown function (DUF974) 87 313 IPR010378 -
Mimi16g01816 1578 MobiDBLite consensus disorder prediction 573 598 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01816 K20310 trafficking protein particle complex subunit 13
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr15:89229479 Mimi16g01816 Mimi-Chr16:77893374 dispersed
Mimi Mimi-Chr16:77893374 Mimi18g00332 Mimi-Chr18:6445078 dispersed
Mimi Mimi-Chr2:50179119 Mimi16g01816 Mimi-Chr16:77893374 dispersed
Mimi Mimi-Chr8:19260636 Mimi16g01816 Mimi-Chr16:77893374 dispersed
Mimi Mimi-Chr1:115492414 Mimi16g01816 Mimi-Chr16:77893374 transposed
Mimi Mimi-Chr4:20156921 Mimi16g01816 Mimi-Chr16:77893374 transposed
Mimi Mimi-Chr18:28608812 Mimi16g01816 Mimi-Chr16:77893374 transposed
Mimi Mimi-Chr10:44353506 Mimi16g01816 Mimi-Chr16:77893374 wgd
Mimi Mimi-Chr16:77893374 Mimi17g02960 Mimi-Chr17:92988169 wgd