AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01823 ATGAAGAGTCCTCTGCAGCTGAATTCAAAATACTATTCGATCATCGATTTCCTCGAATCCAAATCATTCTCATGGATTTTCATCGCAGACCACCGTGATCCATGGCGATCGACCCTCTCATGGATCACCTTTTTCCTCTTAACGTTTGCAGTTCCAATGTTCTCCCACTTTGCTCTTCATCATCGCAATAACCTCCGCCCATTCGACTGGATCGTGCAAGCATCTCTCTCGTTGTTCTCCACTCTGTCGTTCGTTAATCTCCGGCGGTTTACTCGGAAGTACGGCCTCCGGCGGTTTCTGTTTCTCGATAAGCTGGACTGCGTTGGTGATCAAGTTACACGAAGGTATTCTCAGGAGGTTGATAAATCAACAATGCTCCTATGTGCTTTCATCCTCCCATGTTTTGTTTGTGACACAATTTACAATATATGGTGGTTTACCTCAGGAGGGACCCGCATATCCTACATCTACAACCTCTACTTTAGCCATGCCATGGCATGCTTGCTGCACATAACTTCTTGGTTATACCGAACCTCACTATTCTTGCTTGTGTGTGTTCTTTTCAAACTCACGTGTTCTCTGCAAATACTTAGGCTGGAAGATTTTGCTCAAGTGTTTGAAAAACTATCTGATGTGGGCTCCATATTGGTCCAACACCTCACTATCAAAAGAAACCTTCGTGTTATAAGTCATCGATTTCGTTCGTTTATTTTATTAACACTAATACTGGTGACAATGAGCCTGTTTGCTTCTTTGCTTGTTACAACTATGGATGGCTCAATTGTAAATATATCAACCACTGGAGAACTCGTGTTATGCTCTATTACACTTGTGTTTGGTCTGTATATATGCCAACGAAGTGCTGCAAAGATCACACATAAAGCTCAAGCCTTAACAAGCTTGGTTACAAAATGGCATATGTGTTCCACTGTTGACTCTTTTGCTGATATGGGCACCATTGATGAAAATCCAAGGGCTGATATTGCTCCACATATGGCCACTTTCTTACTGGTTCAGACCAATTGTTACCAGTTCATTGTTCCTGTTGGCCTTGTTGCATTAGGCTGTTTTGATGCTCATCACCCTTTGTTGCTTGTGACTACTATGGTTGATTATGGTGTGGTGCTTCCATGTGTAAAAGATGTTGTAGAATTCAAGCCACCGTTTAGTAAAATCAAAGAATCCCTTGGCATCGGGATTGTGATCACAACATTTGCACCTATTAGGTCAGGGTTTGATTTTAGTAGTCGCTTCTTCTACCCAAAAGTAGGAATAGATGACGTAATGATATAA 1293 41.92 MKSPLQLNSKYYSIIDFLESKSFSWIFIADHRDPWRSTLSWITFFLLTFAVPMFSHFALHHRNNLRPFDWIVQASLSLFSTLSFVNLRRFTRKYGLRRFLFLDKLDCVGDQVTRRYSQEVDKSTMLLCAFILPCFVCDTIYNIWWFTSGGTRISYIYNLYFSHAMACLLHITSWLYRTSLFLLVCVLFKLTCSLQILRLEDFAQVFEKLSDVGSILVQHLTIKRNLRVISHRFRSFILLTLILVTMSLFASLLVTTMDGSIVNISTTGELVLCSITLVFGLYICQRSAAKITHKAQALTSLVTKWHMCSTVDSFADMGTIDENPRADIAPHMATFLLVQTNCYQFIVPVGLVALGCFDAHHPLLLVTTMVDYGVVLPCVKDVVEFKPPFSKIKESLGIGIVITTFAPIRSGFDFSSRFFYPKVGIDDVMI 430
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01823 430 SUPERFAMILY Diaminopimelate epimerase-like 356 426 - -
Mimi16g01823 430 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 22 319 IPR021924 -
Mimi16g01823 430 Pfam Protein of unknown function (DUF3537) 24 317 IPR021924 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01823 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:22060362 Mimi16g01823 Mimi-Chr16:78008213 dispersed
Mimi Mimi-Chr16:78008213 Mimi4g01033 Mimi-Chr4:19469991 dispersed
Mimi Mimi-Chr16:78008213 Mimi17g00890 Mimi-Chr17:50080078 transposed