AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01861 ATGTGGGAGTTAAAGATAGCAGAAGGAAATGGGCCCTATTCATATAGCACAAATAACTTTGTTGGTAGACAATTCTGGGAATTTAATCCAGATGCTGGAACCTTTGAGGAGAAAGAAGAAGTTGAAAGGCTGCGCGAAAGCTTTAAAAATAGCCGAAGAAATGGAGGATTTCATGCTTGTGGTGATCTGTTGATGCGAAGACAGGAAAATGGAATCGATGTTACAAGCATACCTACAATGAAAGTGAGTGAAAGTGAGCAAGTGGCTATTGAAGTTGTTACAAATGCCGTAAAGAAAGGTGTAAGACTACAACGTGCGATCCAAGCCAAAGATGGACATTGGCCAGCTGAAAATGCAGGCCCCATGTTTTTCACCCCTCCACTTTTAATTGCCTTATACATCAGTGGTACCATTAATACTGTTCTAACGGAAGAACACAAGAAGGAGATGATACGTTACTTCTACAATCATCAGAATAAGGATGGCGGATGGGGATTTTATATCGAAGGCAAGAGCACAATGATTGGATCTGCATTGAGTTATGTAGGTTTACGAATACTTGGAGAAGGTGAAGACGATTATGCAATTGCTAGAGCTCGTAAGTGGATAATTCACCATGGAGGTGCAACCTCTATTCCCTCTTGGGGAAAGGTTTATCTTTCGGTTCTTGGAGTGTATGAATGGGAGGGTTGCAATCCATTGCCACCAGAATTCTGGCTCTTCCCATCAGCCTTTCCTTTTCATCCAGCTGAGATGTGGTGCTACTGTCGGACAACCTACATGCCCATGTCGTATTTATATGGCAAACGAGTTCAAGGGCCAAGAACACCACTTGTTTCATCATTAAGGAAAGAAATACACCCCATCCCTTTTGAGGATATTAATTGGAATAAGCAACGAAACAACTGTTGTAAGGAGGATTTCTACTATCCACATTCATTTCTTCAAGATGCACTCTGGCATAGTCTTCATTACCTTACTGAGCCGGTTCTCAAGTATTGGCCGTTTTCGAAACTTAGGCAGAGATCTATTGACAAAGTTGTTGAACTAATGCGCTACGAATCAGAAGAGACTAGATATATGACCATAGGATGTGTTGAAAAAAGTCTACAAATGATGTGTTGGTGGGCAGAGAATCCAAATGGGGATGAATTCAAATATCACCTAGCTAGAGTACCAGATTACCTATGGATCGCGGAAGATGGAATGACAATGCACAGTTTTGGTAGTCAAGTGTGGGATTGCACTCTTGCAGTTCAAGCAATTACTGCAAGCAATATGGTTGAGGAATATGGTGATTGTCTCAAAAAGGCCCACTTCTACTTGAAGGAATCACAGGTTGTGAAAGAAAATCCTTCAGGTGATTTCATTAAAATGTGTCGACAGTTCACAAAAGGATCATGGACTTTCTCTGATCAAGATCACGGATGGACTGTCTCAGATTGTACATCAGAGGCACTAAGGTGTCTGATGTTATTATCACACATGCCTAAAGAAATAGCCGGAGACAAGGATGATCCTGCCCGACTCTATGATGCAGTGAACGTGCTACTATACTTGCAAAGTCCTATAACTGGAGGATTTGCTGTTTGGGAGCCACCAGTTCCAAAACCATTTCTACAGCTTCTGAATCCTTCAGAGATTTTTGCAGATATTGTTGTAGAGAAAGAGCATGTGGAAACCACATCCTCTATTATCGGAGCTCTGGTAGAATTCACTTGTCTCCACCCAAGACACAGAAAGGATGAAATAGCACTTTCGATTTCAAAAGGAGTACGGTATCTTGAGGAAACCCAATGGCTTAATGGTTCATGGTATGGTTACTGGGGTGTATGCTTCATATATGGAACATTTTTTGCTTTAAGGGGTTTAAGTTCCACCGGATTGACATACGATAACAATGAAGCAGTCCGTAAAGGTGTCGAGTTCTTACTTTCAATACAGAATGAAGAAGGGGGTTGGGGAGAAAGTCATATATCTTGCCCTACTGAGGTATATACACCATTGGAAGGAAACCGAACAAATCTGGTGCAAACATCCTGGGCTATGCTTGGTCTTATGTTTGGCGAACAAGTCGAAAGAGATCCAACGCCTTTACACAAAGCCGCAAAGCTGTTGATTAACGCTCAAATGGATGATGGAGATTTTCCTCAACAGGAAATTACAGGAGTATACATGAAGAATTGTCTGCTGCTTTATGCACAATACAGAAACATATTTCCACTCTGGGCACTCGGAGAGTATCGTAAGCGTGTCTGGGGGATATAA 2268 41.71 MWELKIAEGNGPYSYSTNNFVGRQFWEFNPDAGTFEEKEEVERLRESFKNSRRNGGFHACGDLLMRRQENGIDVTSIPTMKVSESEQVAIEVVTNAVKKGVRLQRAIQAKDGHWPAENAGPMFFTPPLLIALYISGTINTVLTEEHKKEMIRYFYNHQNKDGGWGFYIEGKSTMIGSALSYVGLRILGEGEDDYAIARARKWIIHHGGATSIPSWGKVYLSVLGVYEWEGCNPLPPEFWLFPSAFPFHPAEMWCYCRTTYMPMSYLYGKRVQGPRTPLVSSLRKEIHPIPFEDINWNKQRNNCCKEDFYYPHSFLQDALWHSLHYLTEPVLKYWPFSKLRQRSIDKVVELMRYESEETRYMTIGCVEKSLQMMCWWAENPNGDEFKYHLARVPDYLWIAEDGMTMHSFGSQVWDCTLAVQAITASNMVEEYGDCLKKAHFYLKESQVVKENPSGDFIKMCRQFTKGSWTFSDQDHGWTVSDCTSEALRCLMLLSHMPKEIAGDKDDPARLYDAVNVLLYLQSPITGGFAVWEPPVPKPFLQLLNPSEIFADIVVEKEHVETTSSIIGALVEFTCLHPRHRKDEIALSISKGVRYLEETQWLNGSWYGYWGVCFIYGTFFALRGLSSTGLTYDNNEAVRKGVEFLLSIQNEEGGWGESHISCPTEVYTPLEGNRTNLVQTSWAMLGLMFGEQVERDPTPLHKAAKLLINAQMDDGDFPQQEITGVYMKNCLLLYAQYRNIFPLWALGEYRKRVWGI 755
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01861 755 FunFam Terpene cyclase-mutase family member 384 754 - -
Mimi16g01861 755 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 333 753 IPR008930 -
Mimi16g01861 755 PANTHER TERPENE CYCLASE-MUTASE FAMILY MEMBER 1 752 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016104(PANTHER)|GO:0016866(InterPro)|GO:0042300(PANTHER)
Mimi16g01861 755 SFLD Prenyltransferase Like 2 84 751 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Mimi16g01861 755 Pfam Squalene-hopene cyclase N-terminal domain 105 356 IPR032697 -
Mimi16g01861 755 Gene3D - 118 408 - -
Mimi16g01861 755 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 120 405 IPR008930 -
Mimi16g01861 755 CDD SQCY-1 97 748 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Mimi16g01861 755 Gene3D - 485 721 - -
Mimi16g01861 755 NCBIfam squalene-oxidosqualene cyclases 97 750 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Mimi16g01861 755 Pfam Squalene-hopene cyclase C-terminal domain 410 750 IPR032696 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01861 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:78732316 Mimi17g02566 Mimi-Chr17:86286268 dispersed
Mimi Mimi-Chr16:78732316 Mimi17g01854 Mimi-Chr17:74043006 transposed