AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01876 ATGGCGATGGTTTCATCGCTGCTGTGTTTCAGCAACTACCGGAGCCTCATTGTTGCCCCTGCCAAAATGCTTGGAACATTAGCCGCTGTCACCAGCAAAAGCACCGGGTTTTGCTCTTCAATTTGGGATTCCGAATACCACAACATCAGCAACAGCAGCAGAGCCTTCGCATCTGTAGCATCTACTCCTCATCCCCAACGCTACTCTGAATATGGTCGCTTGCTTCCATGCCCTGCCGAGAATTTTCAACCTAGAATCGAGCACTTGGTTGTTAAAGAAGGAGGGACCATACTCAATTTCATTACCAAGGCTTTGGATCTTCCACCTTTGTACGTTGCAGATCTTATTCATTTTGGAGCAGTTTTCTATGCCCTTGTATGCCCAAAGCCTCCTTTAACTGCCACACCAGAGGAAATCAAGTTGTACAATGAAGTTACCGACCCGTCAGTCCTAAAACTGAGACCCTCAATTAAGGGAAAAACTGTGAGGGAGGCACAAAATACTTTTAGAATTACTCATACTGATCAGTTTGTTGAAGCAGGGACATATGTGAGGGTGCATGTACGCCCAAAAAGATTTCCAAGATGTTATGAGATTGACTGGAGGTCCAGAATAATTGCTGTTACGGATTCCTATGTGGTTCTCAACAAGCCTGCTGGCACATCAGTAGGTGGAACTACAGACAACATTGAAGAAACTTGTGTAAATTTTGCTACTCGTGCCTTGGAATTTACTACTCCATTAATGACAACTCATCAGATTGATAACTGCACAGAAGGCTGTGTTGTGCTAGCTAGAACTAAGGATTACTGTTCAGTTTTTCATAAAAAGATCAGGGAGAAACAAGTGAAGAAGCTTTATCTGGCACTTGTTGCTGCTTACGTGCCATGTGGAGTCATGACGCATTACATGCGACCTTTACGTATGGCTCCTAAAGTTATTTCCAAAGACTTCATCAAGGGATGGAACATGTGCCAACTTGAGGTCCTGGAATGTATAAAAGTCCCCTGGCCTAATGATTTAGTTGAAAAGGCATATGGAATTGAGGATATTAGTTGGCCTAATAAAGAGTTTGCATACCAGTGCAAAATCAGCCTCTTAACAGGCCGTACTCACCAGATTCGAGCTCAATTGGCAGCATGTGGTGCACCAATAGTGGGTGACTCGATGTATATGCCAGCTGCAATGGCAGAGCTAGCCAGCCCTGGGCTAAATCCTTTTGGGGAGTACAAACAGCAATTTGAAAATGAGGTCCATAGAGAACGGGCTGCTGAAGAATGGGCTGCAAAACATGGGAAAGAACCAGGGAGAAATCCATGCAATTATCCAGCAGTGTTAGGCACTTTGAAAGCCTTTCCAGTGCTGATTGAAAGCCTTACTTGGGGCTGCATCCTTAGTCCATCTTTCTGGGTGTACAAGGACAAAATGTGTGTGATACAATTTGAATCAAAGGAACTGGGTCAAGGCCGAGAACATAACTTTTCTTGGATGAAAAAAGATAAGAGTGAGAGGAAAGTAAGGAAAAATTATCAGGTAAACAAGTTGATATGCCATGGGAAATATGGAGTCATTTTATTCATTGTTGATGCTTGGTTTCTTGAAAAGAAAATTCATGGGAGTGAGGCTAAAATGCCAAGAGAGATTACATGGAAGAAGGATATTTACATATTCCATTCTTCATCATCTAGTCCAAGGATTAAAGTTGAGGAGCTACAAGTCTTGTTGAGATTTCAAGATCTTGAAGGAACACATTAA 1755 42.68 MAMVSSLLCFSNYRSLIVAPAKMLGTLAAVTSKSTGFCSSIWDSEYHNISNSSRAFASVASTPHPQRYSEYGRLLPCPAENFQPRIEHLVVKEGGTILNFITKALDLPPLYVADLIHFGAVFYALVCPKPPLTATPEEIKLYNEVTDPSVLKLRPSIKGKTVREAQNTFRITHTDQFVEAGTYVRVHVRPKRFPRCYEIDWRSRIIAVTDSYVVLNKPAGTSVGGTTDNIEETCVNFATRALEFTTPLMTTHQIDNCTEGCVVLARTKDYCSVFHKKIREKQVKKLYLALVAAYVPCGVMTHYMRPLRMAPKVISKDFIKGWNMCQLEVLECIKVPWPNDLVEKAYGIEDISWPNKEFAYQCKISLLTGRTHQIRAQLAACGAPIVGDSMYMPAAMAELASPGLNPFGEYKQQFENEVHRERAAEEWAAKHGKEPGRNPCNYPAVLGTLKAFPVLIESLTWGCILSPSFWVYKDKMCVIQFESKELGQGREHNFSWMKKDKSERKVRKNYQVNKLICHGKYGVILFIVDAWFLEKKIHGSEAKMPREITWKKDIYIFHSSSSSPRIKVEELQVLLRFQDLEGTH 584
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01876 584 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 125 403 IPR050188 GO:0000455(PANTHER)|GO:0009982(PANTHER)
Mimi16g01876 584 Gene3D Pseudouridine synthase 198 423 - -
Mimi16g01876 584 SUPERFAMILY Pseudouridine synthase 197 397 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Mimi16g01876 584 CDD PseudoU-synth-RluA-like 212 404 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Mimi16g01876 584 Pfam RNA pseudouridylate synthase 212 380 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01876 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:79033179 Mimi4g00219 Mimi-Chr4:4564683 dispersed