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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g01891 ATGACCACCCTAGCCAAGATCTTGATCATAACCCTCACCATTCTCATGGCCCTAGCCATAACTCACTCAACCACACCAACCCATGAAACCCCATTAGACATTGAACACCATAAACACGATACCATAAGGGTTGGCAGGTTCCTAGCACAACAACCCAATGGCTTATTGAAATGCAACAAAAACCCTAGACTTTGTCATGCCAAAGGTAGCCCCGGACCCGACTGTTGCAACAAGAAATGTGTTAACGTGATGACCGATAAACAAAACTGTGGACTATGTGGACGGAAATGCAAGCATATGGAGATTTGTTGCAAAGGACATTGTGTCAACCCGATGGTGAACAAGCATCATTGTGGTGGATGCAACTATGTGTGCGAGAGAGGCGACAGTTGCGAAGGCAAGCTATGA 408 46.08 MTTLAKILIITLTILMALAITHSTTPTHETPLDIEHHKHDTIRVGRFLAQQPNGLLKCNKNPRLCHAKGSPGPDCCNKKCVNVMTDKQNCGLCGRKCKHMEICCKGHCVNPMVNKHHCGGCNYVCERGDSCEGKL 135
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g01891 135 Pfam Stigma-specific protein, Stig1 27 132 IPR006969 -
Mimi16g01891 135 PANTHER STIGMA-SPECIFIC STIG1-LIKE PROTEIN 3 5 132 IPR006969 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g01891 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:79261307 Mimi2g01555 Mimi-Chr2:86053112 dispersed
Mimi Mimi-Chr16:79212643 Mimi16g01891 Mimi-Chr16:79261307 proximal