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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02048 ATGGGCAATTACAGGTTCAGATTCTCAAATATCATCCCCAATTCTTGGTTTTACAGCTCCATCACAGGTAACAAAGTCAAGAACAAATTGACCAAAACCCAACCAATCTCAACTTCATCATCGTCTTCGTTTCCATCTGCACAATCGCCGAATTACCAAAGAAAATCATACTACTTCACTAGAGAGCTAATTCAACCCGACCCGAAGGTTCGTACTCGGGATTTTCCACCAACTGACACTCAAAAACCCGACCCGAGAAGAAAGTCATCCAAGAAAAAAAGACCCATTTCCCCGAAGAAACAAATTCGCCGGAAATTGGTCTCGCCGGAACTCAATCCGGCCGGCAGGATCACACCAGAGTCCGGTTCGACGGGATTCAATTCCTCCGATACGGAAGTCATGTCGCCTGACCACTCTCTAAGTTGCTCGTGCAAAACCACCAACTCATACGACGACGTTTATGGGAAAGTTGACCTCCCGCCGATTATAACAAAACCCGCGAAACACGAGGAATTCGGGTCGGGTAAATGGGTGATTGACGGAGGAAAGCAGGGTTTAACGGTGAAGGTTGCAAAAGACGGCATTACACGCAGTCCCGTTAGAAAACTGAAAGGAAACGGTTACTCGCCGAGGTTAGGGAACCGGGTCCGGGTAAACGGGATAAACGGTGGCAGGAGAAAGAACGGAAGTCGCCGGAGCTTGTCGGAAAGTATGGCGGTTGTGAAAACATCGGTGGATCCCGGGAGGGATTTTAGAGAATCGATGGTTGAGATGATAACGGTGAGTAAGATGAAGAGTTCGAAAGATTTGGAAGATCTTCTTGCATGCTATCTTGCATTGAATTCTGATGAATATCATGAGCTGATCATCAACGTATTTAAGCAAATTTGGTTTGAATGTACAGATATTAGACTGTAG 918 46.08 MGNYRFRFSNIIPNSWFYSSITGNKVKNKLTKTQPISTSSSSSFPSAQSPNYQRKSYYFTRELIQPDPKVRTRDFPPTDTQKPDPRRKSSKKKRPISPKKQIRRKLVSPELNPAGRITPESGSTGFNSSDTEVMSPDHSLSCSCKTTNSYDDVYGKVDLPPIITKPAKHEEFGSGKWVIDGGKQGLTVKVAKDGITRSPVRKLKGNGYSPRLGNRVRVNGINGGRRKNGSRRSLSESMAVVKTSVDPGRDFRESMVEMITVSKMKSSKDLEDLLACYLALNSDEYHELIINVFKQIWFECTDIRL 305
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02048 305 MobiDBLite consensus disorder prediction 66 137 - -
Mimi16g02048 305 NCBIfam uncharacterized plant-specific domain TIGR01568 238 299 IPR006458 -
Mimi16g02048 305 MobiDBLite consensus disorder prediction 87 101 - -
Mimi16g02048 305 ProSiteProfiles OVATE domain profile. 240 299 IPR006458 -
Mimi16g02048 305 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 38 300 IPR038933 GO:0045892(InterPro)
Mimi16g02048 305 MobiDBLite consensus disorder prediction 117 137 - -
Mimi16g02048 305 Pfam Transcriptional repressor, ovate 244 299 IPR006458 -
Mimi16g02048 305 MobiDBLite consensus disorder prediction 32 51 - -
Mimi16g02048 305 MobiDBLite consensus disorder prediction 66 86 - -
Mimi16g02048 305 Pfam DNA-binding domain 1 19 IPR025830 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02048 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3981825 Mimi Mimi16g02048 Mimi-Chr16:82221104 Mimi5g01291 Mimi-Chr5:68817567
4023056 Mimi Mimi12g00334 Mimi-Chr12:6385697 Mimi16g02048 Mimi-Chr16:82221104
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi Ovate 1e-22 No_clan TF OFP