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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02110 ATGGAATCGGAACAGAAACCGGTGATGATCGTCGGTATCGATGACAGCGATCACAGTTTCTACGCACTTGAATGGACGCTGGATCACTTTCTGGCACCTTCTGCTCCGAATTCTCCGTTCAAGCTAATCGTTGTTCACTCCAAGCCTTCTCCGACGTCCGCCATCGGTTTCGCCGGTCCTGGTGCAGCGGATGTTTATCCGTTTGTGGATTCGGATTTGAAGAAGATCGCTGCTCGAGTGGTGGAAAGAGCGAAGGAGCTTTGCCATTCGAAATCGGTGGATGATGTGAATGTTGAAATCGTGGAAGGCGATGCTAGGAATGTTCTATGTGAAGCTGTAGATAGGCACCATGCTACCATGCTAGTAGTCGGTAGCCATGGTTATGGAGCAATTAAAAGGGCGGTTTTGGGGAGTGTAAGTGACTATGTTACTCATCATGCCCACTGCACCGTGATGATTGTGAAGAAGCCAAAGATCAAGCACTCTGCCGATCCTGTTCCTTGGCTTCAATTGGAGTCAGAGCTTATCTCTACCGTTTTGAGAAGCATAAATTGGAGTCGAGAAGGTAGCAGCCAAAAGGCTGCTGTTGTTGCTGGCAGACACCAGAGAAAAGGAGAGAGGGAGAGAGTGCGCCAAACCTTGGCGTCGGCAAAGGTTCACAGAGGGTGCAATAGCCTTGCTGCTGTGATACATAAATCAAGAAAGAGAGCAGCACCTTGGCTGCTGGGCTGA 732 49.59 MESEQKPVMIVGIDDSDHSFYALEWTLDHFLAPSAPNSPFKLIVVHSKPSPTSAIGFAGPGAADVYPFVDSDLKKIAARVVERAKELCHSKSVDDVNVEIVEGDARNVLCEAVDRHHATMLVVGSHGYGAIKRAVLGSVSDYVTHHAHCTVMIVKKPKIKHSADPVPWLQLESELISTVLRSINWSREGSSQKAAVVAGRHQRKGERERVRQTLASAKVHRGCNSLAAVIHKSRKRAAPWLLG 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02110 243 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 158 - -
Mimi16g02110 243 CDD USP-Like 9 154 - -
Mimi16g02110 243 Pfam Universal stress protein family 9 155 IPR006016 -
Mimi16g02110 243 PRINTS Universal stress protein signature 6 24 IPR006015 -
Mimi16g02110 243 PRINTS Universal stress protein signature 115 127 IPR006015 -
Mimi16g02110 243 PRINTS Universal stress protein signature 133 155 IPR006015 -
Mimi16g02110 243 Gene3D HUPs 3 167 IPR014729 -
Mimi16g02110 243 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02110 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:83415621 Mimi2g00237 Mimi-Chr2:7316706 dispersed
Mimi Mimi-Chr16:83415621 Mimi16g01328 Mimi-Chr16:66175537 transposed