AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02117 ATGGCAAGCGGTGACGTAGCTTCACCGACTATAGCATCTGCGTCGATAAAACCAATTAACAAGAGCGTCATCCACAGAATCTGCTCCGGGCAGGTTATTTTGGACCTCCCGTCGGCCGTTAAGGAATTGGTTGAGAACAGCCTGGACGCCGGCGCCACCAGCATCGAGGTTTACTTGAAGGAATACGGTGAAGAATCGTTTCAAGTCGTTGATAATGGCTGTGGCATTTCACCGCACAATTTCAAGGCTCTAGCACTTAGGCATCATACGTCAAAGTTAACTGATTTTCCTGATCTTCAATCTTTGACAACCTTCGGGTTTAGAGGGGAGGCTCTTAGTTCTCTGTGTAATTTAGGGGATTTAACAGTGGAAACAAGAACACAGCACGAGAAAGTAGCAACACACTTGACTTTTGATCGATCCGGTGTTCTTACCGATGAGAAGAAGACTGCAAGACAGGTTGGTACCACCGTCACTGTGAAGAAATTGTTCTCCAACTTGCCTGTGAGATGCAAAGAGTTTCATCGCAACATCAGGAAGGAGTATGGGAAGTTGATTTCATTACTGAATGCCTATGCTCTTACTGCGAAAGGGGTTCGGTTAGTTTGTAAAAATACAACTGAAAAAAACAAAAGCTCCATAGTACTTAAAACACAGGGAAGTGGTTCCCTCAAGGATAATATCATTACAGTGTTTGGCATGAACACTTTCACCTGCTTAGAGCCTTTGAGTCTATTTATATCAGATACTTACCAAGTGGATGGATTTCTTTCTAAATCTGGCAATGGTAGCGGGCGGAGTTTAGGGGACCGACAATACTTTTTTGTTAATGGCCGACCTGTTGACATGCCAAAAGTTAGCAAGCTTGTCAATGAACTGTATAGATCTGCAAACTCAAAGCAATATCCAATCGCAATAATGAATTTTGTTGTTCCCACTAGTGTTTGTGATGTCAATGTGACCCCGGACAAGAGAAAATTATTCTTATCTGATGAAGGCTCGGTTTTGAAGTCATTAAAAGAAGCGATATTGAAGATTTATTCCCCAGATCTTGCTAGCTTCTCAGTACAAAAAGCTGAGAAACTCAGTCAAGAAGAAACTAACTCCAAGATTTGCTCTCAACATGAACAGTCTTCTTCGCAGTTTTCATCAAGGCAAGCATCACAAGAGGATAGTGATTGTAAGAAGGAAACCAACATTGTTGTGAGTGATGATGAAGAGACCTTAAGATCCCCGCCTGCTGTTAATCTGATTAATGTTGATGATTTCAGTTCATCAAAAAGAGATTTAGCACTTAAATTTCATGGCATGAAGGAAACCGATACTATTTCTGGGAGCTATAGTAAGAATCCTGCAGTTGTAACTAACACTTCTTTTAATCGGCAGTCATTATCATCATTCAACTCCACAATGCGTAAGTTTGTCAATGAAAGAACAGATTCGCCTTGTTCTGTTGGTCCTGTTCAGTCACTGCTTACATCATTTGTTGCTGTCAACAAAAGAAAGCATGAAAGCATGAGTAATACTTTATCTGAGGTCCCTGTTCTTAGAAATGGGCCCGCCATTTGTCAATCTGTTGATCAAAGGTATAAATCAAATTCTACATTTGCAAAATCTTTAGTGAAATGTCATGCAGTTAATGACTCTGGTGAAGTTGACCTGGATGAGTCAAAGTCAAAGCCTTTGAATCACACTCTGGTGGATGAAGAATGCGACGATGTTTTAGAAGTCTCCCCTGTTAAAGTTGTTAAAACTTCTGGACAAGACATGATAAGAATTAAGACACCTGAATCTGTTTCGAAATCCGTGTTAAATGCTTCAGCTCCTGAAAAATTTAATGATGAGGTGTCAACTCCATTAAATTCTTCTGAGCCACCTTCAGATCCACCTGTGTCTTCTTCTCATTCAAAGATGTGTTACACAATGCAATTTAGTTTCGAGGAATTAAAGAAAAAGAGGCAGCAAAAATTAGCAGCATTTCAAGCAAGCAAAAATACACCCTGGATATCAAAGACTAAAGGATACTATGCTGATGCAACATTAGAGATTTCTCAAGTGGTAAAAGAGGATGCTAAAGCAAAAGCTTTATCTGCAGCAACAAGTGAATTGGAAAAGTTATTCAAGAAGGAAGATTTTGGCCGCATGAAGGTTATTGGGCAATTCAATCTTGGATTCATCATTGGCAAGTTAGACCAAGACCTCTTTATAGTGGATCAGCATGCTGCTGATGAAAAATACAATTATGAGCGTCTGTCACAGTCCACCATCTTGAACCAACAACCTTTACTAAGGCCAATTTCGGTGGAGTTATCTCCTGAAGAAGAGATAATCACCTCGATGCATATGGATACTATCAGGAAAAATGGGTTTTCATTAGAAGAAGACGTGCATGCTCCTCCTGGGAACCATTACAAATTAAAAGCCGTCCCCTTTAGCAAAAACATAACTTTCGGTGTTGCAGACGTGAAGGAGCTCATATCTATTTTGGCTGATAATCAGGGAGAATGTTCGATTATGGGTAGTTATAAGATGGACACTGCTGATTCTGTGTGCCCTCCAAGAGTACGTGCAATGTTAGCATCACGTGCCTGCAGATCTTCTGTTATGATTGGCGATCCACTTGGAAGAAATGAGATGCAAAAGATAGTTGAACATTTGATGGGTTTAAGATCACCATGGAATTGTCCACATGGCAGACCGACAATGCGCCACTTGGTGGATTTAACAACCGTTCATAAAAGGTCAAATGAAGACAGCTTAGTTTAG 2766 40.46 MASGDVASPTIASASIKPINKSVIHRICSGQVILDLPSAVKELVENSLDAGATSIEVYLKEYGEESFQVVDNGCGISPHNFKALALRHHTSKLTDFPDLQSLTTFGFRGEALSSLCNLGDLTVETRTQHEKVATHLTFDRSGVLTDEKKTARQVGTTVTVKKLFSNLPVRCKEFHRNIRKEYGKLISLLNAYALTAKGVRLVCKNTTEKNKSSIVLKTQGSGSLKDNIITVFGMNTFTCLEPLSLFISDTYQVDGFLSKSGNGSGRSLGDRQYFFVNGRPVDMPKVSKLVNELYRSANSKQYPIAIMNFVVPTSVCDVNVTPDKRKLFLSDEGSVLKSLKEAILKIYSPDLASFSVQKAEKLSQEETNSKICSQHEQSSSQFSSRQASQEDSDCKKETNIVVSDDEETLRSPPAVNLINVDDFSSSKRDLALKFHGMKETDTISGSYSKNPAVVTNTSFNRQSLSSFNSTMRKFVNERTDSPCSVGPVQSLLTSFVAVNKRKHESMSNTLSEVPVLRNGPAICQSVDQRYKSNSTFAKSLVKCHAVNDSGEVDLDESKSKPLNHTLVDEECDDVLEVSPVKVVKTSGQDMIRIKTPESVSKSVLNASAPEKFNDEVSTPLNSSEPPSDPPVSSSHSKMCYTMQFSFEELKKKRQQKLAAFQASKNTPWISKTKGYYADATLEISQVVKEDAKAKALSAATSELEKLFKKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNYERLSQSTILNQQPLLRPISVELSPEEEIITSMHMDTIRKNGFSLEEDVHAPPGNHYKLKAVPFSKNITFGVADVKELISILADNQGECSIMGSYKMDTADSVCPPRVRAMLASRACRSSVMIGDPLGRNEMQKIVEHLMGLRSPWNCPHGRPTMRHLVDLTTVHKRSNEDSLV 921
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02117 921 FunFam DNA mismatch repair protein PMS1 234 353 - -
Mimi16g02117 921 Gene3D - 12 232 IPR036890 -
Mimi16g02117 921 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 30 231 IPR036890 -
Mimi16g02117 921 NCBIfam DNA mismatch repair endonuclease MutL 16 397 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mimi16g02117 921 Gene3D - 720 905 IPR042120 -
Mimi16g02117 921 SMART MutL-C-2 717 874 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Mimi16g02117 921 MobiDBLite consensus disorder prediction 602 635 - -
Mimi16g02117 921 Gene3D - 241 351 IPR014721 -
Mimi16g02117 921 Gene3D - 757 869 IPR042121 -
Mimi16g02117 921 MobiDBLite consensus disorder prediction 389 404 - -
Mimi16g02117 921 Pfam MutL C terminal dimerisation domain 718 874 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Mimi16g02117 921 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 38 148 - -
Mimi16g02117 921 SUPERFAMILY DNA mismatch repair protein MutL 713 905 IPR037198 -
Mimi16g02117 921 MobiDBLite consensus disorder prediction 367 388 - -
Mimi16g02117 921 CDD HATPase-MutL-MLH-PMS-like 23 205 - -
Mimi16g02117 921 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 16 913 IPR038973 GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0016887(InterPro)|GO:0016887(PANTHER)|GO:0032300(PANTHER)|GO:0032300(InterPro)|GO:0032389(PANTHER)|GO:0140664(InterPro)
Mimi16g02117 921 FunFam Mismatch repair endonuclease pms1, putative 757 869 - -
Mimi16g02117 921 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 348 IPR020568 -
Mimi16g02117 921 CDD MutL-Trans-hPMS-2-like 223 348 - -
Mimi16g02117 921 SMART DNA-mis-repair-2 228 348 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mimi16g02117 921 Pfam DNA mismatch repair protein, C-terminal domain 229 347 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Mimi16g02117 921 ProSitePatterns DNA mismatch repair proteins mutL - hexB - PMS1 signature. 106 112 IPR014762 -
Mimi16g02117 921 MobiDBLite consensus disorder prediction 367 406 - -
Mimi16g02117 921 FunFam Mismatch repair endonuclease pms1, putative 13 232 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02117 K10858 DNA mismatch repair protein PMS2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr11:25387210 Mimi16g02117 Mimi-Chr16:83566623 dispersed
Mimi Mimi-Chr16:83566623 Mimi1g02278 Mimi-Chr1:97399326 dispersed
Mimi Mimi-Chr16:83545806 Mimi16g02117 Mimi-Chr16:83566623 proximal