AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02118 ATGGATTCCACCACTCAAGAACTTAAACACCGAGCCAAAGACCAAACTCCGACAGTTATTGATCAAGATGATGACACCAGTGTTGGGATAATCTTGATGTGTCAATGGGACTCGACTTTCAGATCGAGAAAAGAACGTAGTAGCAAGAAAGAAGACCGTCACATCGCCGGAAGGAAGAAAGCACCGGTGATTGCAAGACCATTCCCGGGAAAGAAGAACAGAAGCCTAGCTGTTGCCGGAAGGAAAATTGGAGAGAAGACCGTGGCCGGAAATTATTCTGGTGTAGAGACCGACGAGCTGAAGGTTCAACGACAGAGAAAGAGACCAATGGCTGAAAAATCTAGACAGAGACCGACCTGTTTTTGGCCGGAAAAAAACCCGAACAAGATCAGTTCGTTTGGAAGAAAAAGAAGATCCAACATGACTCAGAAGTCACGTCGTCCCGCAATCCCGAGACGTGGTATCCGATCACTCGCGGTTGGGATCGCGATCCCGTTGGCTCTCACCTTGGCCAATATAACGATGTGTGGCTGGAACCGTAGCTACCGAACCATTCAGAAGCCCTTCTGGATCCCGCCGTTATGGGCTTTGCATTTAACATGTTTGTCTTCGGCTTTCGTCATGGGTCTGTCCGCTTGGCTGGTCTGGGCCGAAGGCGGGTTCCATGAAAACCCGGCTTCGGTCGGGTTTTATTTGGGTCAGCTGGTTCTGAGCCTGACTTGGGACACGGTATTCTTTAAGATGGGTGCGACAAGGCTGGGGTTATTAGTGTGTTTGGGCCAGATGGCGGCTATGTTGTCTTGCTATCGGATGTTCGGGCGGGTTAACCGGACTGCGGGTGACTTGGTGAAGCTTTGTTTGATCTGGGAGTGGCTGGAGGGAGCTTGCTCGATTTCGCTCGGGAGAGTAAAGGTGAACGAATGGGCCGAAAATGGGAGTGGAGGAAAAGTGCGCATTTTATCTACCATTAGCGGCGATAAATCGCCACCAAAGGTGTCGCTGCTATTGGTTAACGAAAAGAAAAGATCTCAGCCTTTGATTTCAACGGTTGGATCGGATGTATGCAGATCCGCGCTTCTTGTCGCCGCAATTGCTCCTGTCGCCGCTAATGTCGTCGCCGCTAATGGGCTTTTTCTTGTAGTGGTACTCTTTTTCCCAATCCTGTCACTCACTTTGGTTTGA 1182 50.0 MDSTTQELKHRAKDQTPTVIDQDDDTSVGIILMCQWDSTFRSRKERSSKKEDRHIAGRKKAPVIARPFPGKKNRSLAVAGRKIGEKTVAGNYSGVETDELKVQRQRKRPMAEKSRQRPTCFWPEKNPNKISSFGRKRRSNMTQKSRRPAIPRRGIRSLAVGIAIPLALTLANITMCGWNRSYRTIQKPFWIPPLWALHLTCLSSAFVMGLSAWLVWAEGGFHENPASVGFYLGQLVLSLTWDTVFFKMGATRLGLLVCLGQMAAMLSCYRMFGRVNRTAGDLVKLCLIWEWLEGACSISLGRVKVNEWAENGSGGKVRILSTISGDKSPPKVSLLLVNEKKRSQPLISTVGSDVCRSALLVAAIAPVAANVVAANGLFLVVVLFFPILSLTLV 393
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02118 393 MobiDBLite consensus disorder prediction 1 20 - -
Mimi16g02118 393 MobiDBLite consensus disorder prediction 101 121 - -
Mimi16g02118 393 MobiDBLite consensus disorder prediction 1 22 - -
Mimi16g02118 393 Pfam TspO-MBR family 165 289 IPR004307 GO:0016020(InterPro)
Mimi16g02118 393 PANTHER PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 141 298 IPR004307 GO:0016020(InterPro)
Mimi16g02118 393 Gene3D TspO-MBR protein 154 302 IPR038330 -
Mimi16g02118 393 CDD TSPO-MBR 158 289 IPR004307 GO:0016020(InterPro)
Mimi16g02118 393 FunFam translocator protein 2 154 306 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02118 K05770 translocator protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
129604 Mimi16g02118 Mimi5g01569
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:83582296 Mimi5g01569 Mimi-Chr5:73728430 dispersed
Mimi Mimi-Chr16:83582296 Mimi6g01539 Mimi-Chr6:60989672 transposed