Gene detail

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Gene ID

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mimi16g02135	ATGTCGTTTAAGAGTATACTTCAGGACATGAAGGGGGATTTTGGGAGCATTTCCAGGAAAGGCTTTGGTCTGAGGTCCAGATCACAGAGAGTGGTGGAGGACCGATCTTCGGTCATTGTTGACGCTTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTGTTACGGGACGTGTTGATGAGGATCGAGGCGTCTGAGTGTGCCTGGCCCCCTAGGAAGAATGTGGTTTCTTGTGCTGGTGTGTGCAGGAATTGGAGAGAGATCATGAAAGATATTGTCAAGAATCCTGAATTTTCGGGCAAATTGACCTTCCCAATCTCGCTGAAGCAGCCTGGTTCAAGGGGATCTCTGATACAATGCTTTATAAAGCGGAACCGAAGCGCTCAAACATATCACCTATACCTCAGTCTAAACCAAGCATCAAATGATGACGGGAAGTTTCTTCTTGCTGCAAAAAAATGTAGACGTGCTACATGCACAGATTATATAATTTCCTTAAACGCAGAAGATGTATCAAAAGGCAGCAGCACTTACATAGGGAAGTTAAGATCAAACTTCCTTGGAACTAAATTCACTGTATATGATGCCCAACCTCCAAATGGTGGCACCTTGACTGCAAAATGTCATTCCTTGAGGCCTGGGAGTATGAAGCGAGTGTCACCTAGAGTTCCAGCTGGAAACTACCCGGTTTCCAACATTTCATACGAACTTAATGTCTTGGGGTCCAGGGGTCCAAGAAGGATGCAGTGTGTAATGAATGCAATTCCTGCAAGTGCTATGGACCCAGGGGGAATAGCTCCAACTCAGACTGAATTCCTTGTCAGCAACGTCGATTCATTTTCATCTATACCTTTCTTTAGATCAAAATCTGCACGCATCGATAATTCCCAATCGGGATCATTGTTGACCGGTCAAAACGACTCGATGCTGATGTTGAAGAACAAAGCACCTAGGTGGCACGAACAACTGCAATGCTGGTGCCTCAATTTCAACGGGCGGGTGACTGTTGCTTCTGTGAAAAACTTTCAGCTAGTTGCTTCTACAGAGAATGGTGAACATGATAATGTGATTATACAGTTTGGAAAAGTTGGAAAAGATGCATTCACAATGGATTATCAGTACCCCTTATCTGCTTTCCAGGCGTTTGCTATTTGTCTTAGCAGCTTTGATACCAAAATTGCGTGTGAATGA	1194	44.56	MSFKSILQDMKGDFGSISRKGFGLRSRSQRVVEDRSSVIVDALKQSCWANMPPELLRDVLMRIEASECAWPPRKNVVSCAGVCRNWREIMKDIVKNPEFSGKLTFPISLKQPGSRGSLIQCFIKRNRSAQTYHLYLSLNQASNDDGKFLLAAKKCRRATCTDYIISLNAEDVSKGSSTYIGKLRSNFLGTKFTVYDAQPPNGGTLTAKCHSLRPGSMKRVSPRVPAGNYPVSNISYELNVLGSRGPRRMQCVMNAIPASAMDPGGIAPTQTEFLVSNVDSFSSIPFFRSKSARIDNSQSGSLLTGQNDSMLMLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASTENGEHDNVIIQFGKVGKDAFTMDYQYPLSAFQAFAICLSSFDTKIACE	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mimi16g02135	397	SUPERFAMILY	F-box domain	42	92	IPR036047	GO:0005515(InterPro)
	Mimi16g02135	397	ProSitePatterns	Tub family signature 2.	382	397	IPR018066	-
	Mimi16g02135	397	PANTHER	TUBBY-RELATED	43	396	-	-
	Mimi16g02135	397	Gene3D	-	41	94	-	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	228	255	IPR000007	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	163	179	IPR000007	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	179	203	IPR000007	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	313	330	IPR000007	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	375	397	IPR000007	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	331	347	IPR000007	-
	Mimi16g02135	397	PRINTS	Tubby superfamily signature	354	373	IPR000007	-
	Mimi16g02135	397	CDD	F-box-AtTLP-like	48	92	-	-
	Mimi16g02135	397	Pfam	F-box domain	48	92	IPR001810	GO:0005515(InterPro)
	Mimi16g02135	397	Pfam	Tub family	109	392	IPR000007	-
	Mimi16g02135	397	SUPERFAMILY	Tubby C-terminal domain-like	97	397	IPR025659	-
	Mimi16g02135	397	Gene3D	Tubby Protein; Chain A	106	397	IPR025659	-
	Mimi16g02135	397	FunFam	Tubby-like F-box protein	105	397	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mimi16g02135	K19600	tubby and related proteins

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Mimi	Mimi-Chr13:17616003	Mimi16g02135	Mimi-Chr16:83895042	dispersed
	Mimi	Mimi-Chr16:83895042	Mimi17g01010	Mimi-Chr17:54625572	dispersed
	Mimi	Mimi-Chr16:83895042	Mimi9g01248	Mimi-Chr9:28870169	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mimi19g00341	.	1	445	TUB Transcription Factor family	AT1G25280	64.978	1.32e-180	508.0
	Mimi17g01010	WGDA	1	445	TUB Transcription Factor family	AT1G25280	73.171	0.0	618.0
	Mimi16g02135	.	1	406	TUB Transcription Factor family	AT2G47900	75.921	0.0	610.0
	Mimi15g00831	ACH	1	393	TUB Transcription Factor family	AT2G18280	59.579	6.82e-173	487.0
	Mimi14g01441	.	1	445	TUB Transcription Factor family	AT1G25280	73.836	0.0	608.0
	Mimi13g00821	.	30	406	TUB Transcription Factor family	AT2G47900	70.153	0.0	537.0
	Mimi12g00824	.	1	445	TUB Transcription Factor family	AT1G25280	57.965	4.08e-160	455.0
	Mimi11g01315	.	82	397	TUB Transcription Factor family	AT1G16070	59.494	4.11e-144	413.0
	Mimi9g01248	WGDA	1	445	TUB Transcription Factor family	AT1G25280	73.684	0.0	624.0
	Mimi6g00654	.	1	393	TUB Transcription Factor family	AT2G18280	57.882	5.02e-169	477.0
	Mimi6g00665	ACH	4	393	TUB Transcription Factor family	AT2G18280	57.346	1.21e-163	468.0
	Mimi3g00079	.	47	379	TUB Transcription Factor family	AT1G53320	72.973	0.0	502.0
	Mimi3g00131	.	1	379	TUB Transcription Factor family	AT1G53320	66.751	0.0	521.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Mimi	Tub	1e-109	CL0395		TF	TUB