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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02138 ATGCCAACAGATAATACACCACGATCGAGCGCTATCATGCCCCGGTATTACTGTGATTACTGCGACACTTACCTGACCCATGATTCTCCCTCTGTTAGGAAGCAGCACAATGCAGGATACAAACACAAGGCAAATGTTAGAATCTACTATCAACAATACGAGGCACAACAAAATCAATATCTGATTGACCAAAAAGTCAAAGAGCATCTTGGGCAAGCTGCTGCATATCAGCAAGTTGGTGCTGCTTACAACCAACTCAGACCCCGGCTTCCTGTTCTACCTGCTCCAATGATGCCAATGCCTGGGAATCCAATGATGCCAATCCCTGGAATGAGGCCACTTGCCCCTTTGCCAAGGCCTATTCCTGGATATCCTGGCATGCCCCCAATGGTGGCACCGCCTGGTGCGCCATCCATGCCTGGTCAGGTTAATCCATCCATGCCCGGTCAGGTCAACCCATCAATACCCGGTCAAGTTAACAATGGTGTGCCAAGGCCCATAACCATTAATGCCCCAATGATGGCCCCAGGGAGCTCAGGAACCCCTACTTCAGGTGCACCACCACCAATGTTCACACCAGGCATGTATCAAGCCAACCCGACTGCACCAGCACAAGCGTCTGGAGGGTTTGAAAGTCCAAATGCTAGTACCCAGCCTCAGGAAGCTAACCATTAG 675 50.67 MPTDNTPRSSAIMPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQYEAQQNQYLIDQKVKEHLGQAAAYQQVGAAYNQLRPRLPVLPAPMMPMPGNPMMPIPGMRPLAPLPRPIPGYPGMPPMVAPPGAPSMPGQVNPSMPGQVNPSIPGQVNNGVPRPITINAPMMAPGSSGTPTSGAPPPMFTPGMYQANPTAPAQASGGFESPNASTQPQEANH 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02138 224 FunFam U1 small nuclear ribonucleoprotein C 13 73 - -
Mimi16g02138 224 MobiDBLite consensus disorder prediction 198 224 - -
Mimi16g02138 224 Pfam U1 zinc finger 13 50 IPR013085 GO:0008270(InterPro)
Mimi16g02138 224 ProSiteProfiles Zinc finger matrin-type profile. 16 48 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Mimi16g02138 224 SUPERFAMILY beta-beta-alpha zinc fingers 13 68 IPR036236 -
Mimi16g02138 224 PIRSF U1-C 13 224 IPR017340 GO:0000387(InterPro)|GO:0000398(InterPro)|GO:0005685(InterPro)
Mimi16g02138 224 Hamap U1 small nuclear ribonucleoprotein C [SNRPC]. 13 206 IPR017340 GO:0000387(InterPro)|GO:0000398(InterPro)|GO:0005685(InterPro)
Mimi16g02138 224 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C 13 211 IPR017340 GO:0000387(InterPro)|GO:0000395(PANTHER)|GO:0000398(InterPro)|GO:0005685(InterPro)|GO:0005685(PANTHER)|GO:0030627(PANTHER)
Mimi16g02138 224 Gene3D Classic Zinc Finger 13 72 - -
Mimi16g02138 224 MobiDBLite consensus disorder prediction 171 224 - -
Mimi16g02138 224 SMART ZnF-U1-5 13 49 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02138 K11095 U1 small nuclear ribonucleoprotein C