AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02145 ATGCAGCAACTTGATTTGAATTCAGCTGTCCACAAGTTTCATGTATTAAGTTCTAAGGAACTTGGCAATCTAATAAGAGATGCTGAAAATGATGCCATTAAATGGACTGATCAAAATGGATTATCTTTTGAGATAAATGTTGAAAATCTAGCAAGATATCTTGGCACACACATAATGGAACATCTTTCATCATTTGAACAAGATGAGGAGCACTTGAGATATTTATTAAGTGGATTAAGATTATTGCATATTTTATATGATATTGCATCTCACCATTCAAAACTTGAGGAGGTTTTAGTTGAAGATATGAATGTTGGAACAAAGTTGCTTGATTTGATATTTTCAATGGTTATTTTTCTTAGTCATTTAGAAGAGGAGACAATTGATGGTTCAATCCAAATGGTCCTTTTGTACTCAGCATTGTTGGCTAGTAGTTTGTATCTACTTAGAGCATTGGTTTCTCCAGATTGGCAAACAGTCACTCTTCTTTTACTTGCACATCCTAAGGTTGATGAATTCACAATAGCAGCATTGACTGCCGTTTGTGTGATTATTAATATTCTTCAATCGAAGCTGCCAGCTCAGCATGTTGACTCTCACATGAAGTCAAAAGTCAATGACGCCTGCTGTGTCTTCCAGCTTTGTGAAGCTTCTCTGCAGTTTCTTCAATCACTTTGCAAACAGATGTTATTTCGGGAACACCTTGTTAAAAATAAGGCGCTATGTAGAGAAGGTGTTGTTCTTAAGTTGGTTAAAAGCATCATGAAGCTGCCTCAATGTGAAGATCCACATCTTATGGGTGTGATTTACAGGCTTAAATCAAAGGTTTTATCTATTATGCTACTTCTTTGTGAAGTAGAAAGCCCATCTTTCTTGGCTATGTCTTTCAGCACCACTCAAAGCTTGGAGTTAGCTGAGTCAACTGTTCTTGAAGTGCTAAAGATGATGTTTTTTGGAGATGTAGAAGACCATCCAAAAGGAATTTTGCAACTTTATGCAATGCAACTAACAGAAGTATTATCTTGTTATTCTAGTTTCAGAACTTACATAGTCTTGAACTTGACAGAAGTTTTGGCGCGTGCATTTTCACAACCTCAAAGAGAATTTTCAAAAACTTGGTGTTCCAATGATCTTGAGCCTGCTGAAGAGGACATTGTTATGGAATTTGATCCCATATCATCAGCTGGACAGGTGTTGGGTTTCATCTCAACATCACAGGTCCAACCTTCTACTTGGAGTAACTTTCAGGCTCCTCAAACTCCTTATGCACATCTGAAATCATCTTTACTGGTCAAAATTCTAGCAAATCTAACAAGTTTTGTTCCTGGTCTATGTGAAGATGAAAAGGCTCTCTTTATCAATGAATTTCTTGAGTGCCTGCAAAATGAATTTACTAAGTTACCTGGTGATGCTGATGAAAGAATAGCTGCTGCTAGCCAAGACCTATCTTCCTTATCATCTCATGCAAAATCTTTGACTCCTGAATTCCTAAATGTAGAACATGTTCATGCCCTCAGGCGAATCGTTAGCCAATTGGAGCGATTACTTGCATCTCAAGAATCTGATATCCACAGAGATATGAAGGTTCATAGTAGAGACCAATGCCCATCATCAGCCCCTAAAACCTCATCTCCGAATGAACACGACGATAGTGGTATTGATAATGAGTGCGAACCAATAAGTTTGGCTATGATCCAACTTCACCAGTTGACTTTTATGGAAAGTGGTCAAAATCAGTCAAATGATGATGATAATGTTGGTGGTCAAAACATTGAAACCTTTAATAGAATAAAAGATTTAGAAATGTTTAAAAGTGAGGAGGAAATACAGCAAAAGAAAAGAAAAAGAACCAAAATGAACGATATGCAAATTGAAATTATGGAAAATGCTTTACTTGATCACCCTGATTTGCAGAAGAGAGCTGGTTCTTTACAACTTTGGGCTGATAAATTGAGTGGTTATGGTTCAGAAGTTACACGTTCCCAGTTAAGGAGTTGGTTAAATAACCGTAAAGCCAAACTAGCACGTGCAGCTGCTAAAGATGCACACGCACATTTTGTCTGGGATGATGTTTTGACTGAAAAACAGACCGGATCATGGCTTGACTGCCTTGATCCAATCTTTGAAAGTTCTCATGAGATCCACCAGAGGAATCTAAGGGAATCAGTTTTAAAAATCTGCGATACCCAATTAGATACCGTTGTGGTCCCCACGTATCGTTTTAAACACGAGGTCGGACAATATGTTATGCTTACAAATTACAATGGAGAGGAGATTGGAACAGGAATCATACATTTAGCAAGAGGTGTGTGGTTTGGAAGGTATTTGGAGGAATTAAGGTTGTGTGTGGTGGATGTTGATGATATCAGGGTGCCAAAATGGACCCAACTCCCGCATCCGACTGATGCGGGTACCACATTTTGCCAGGCTGAAATGATTCTTGGTAGAATCAGGATATTGTGGAATTCCAGCCAGCTTTTATTGATCCCACCAGCAGATGCATACATATGA 2511 38.19 MQQLDLNSAVHKFHVLSSKELGNLIRDAENDAIKWTDQNGLSFEINVENLARYLGTHIMEHLSSFEQDEEHLRYLLSGLRLLHILYDIASHHSKLEEVLVEDMNVGTKLLDLIFSMVIFLSHLEEETIDGSIQMVLLYSALLASSLYLLRALVSPDWQTVTLLLLAHPKVDEFTIAALTAVCVIINILQSKLPAQHVDSHMKSKVNDACCVFQLCEASLQFLQSLCKQMLFREHLVKNKALCREGVVLKLVKSIMKLPQCEDPHLMGVIYRLKSKVLSIMLLLCEVESPSFLAMSFSTTQSLELAESTVLEVLKMMFFGDVEDHPKGILQLYAMQLTEVLSCYSSFRTYIVLNLTEVLARAFSQPQREFSKTWCSNDLEPAEEDIVMEFDPISSAGQVLGFISTSQVQPSTWSNFQAPQTPYAHLKSSLLVKILANLTSFVPGLCEDEKALFINEFLECLQNEFTKLPGDADERIAAASQDLSSLSSHAKSLTPEFLNVEHVHALRRIVSQLERLLASQESDIHRDMKVHSRDQCPSSAPKTSSPNEHDDSGIDNECEPISLAMIQLHQLTFMESGQNQSNDDDNVGGQNIETFNRIKDLEMFKSEEEIQQKKRKRTKMNDMQIEIMENALLDHPDLQKRAGSLQLWADKLSGYGSEVTRSQLRSWLNNRKAKLARAAAKDAHAHFVWDDVLTEKQTGSWLDCLDPIFESSHEIHQRNLRESVLKICDTQLDTVVVPTYRFKHEVGQYVMLTNYNGEEIGTGIIHLARGVWFGRYLEELRLCVVDVDDIRVPKWTQLPHPTDAGTTFCQAEMILGRIRILWNSSQLLLIPPADAYI 836
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02145 836 PANTHER NODULIN HOMEOBOX 2 577 IPR039325 GO:0003697(InterPro)|GO:0009908(InterPro)
Mimi16g02145 836 SMART HOX-1 612 681 IPR001356 GO:0003677(InterPro)
Mimi16g02145 836 ProSiteProfiles 'Homeobox' domain profile. 610 677 IPR001356 GO:0003677(InterPro)
Mimi16g02145 836 MobiDBLite consensus disorder prediction 523 555 - -
Mimi16g02145 836 Coils Coil 502 522 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02145 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
129615 Mimi16g02145 Mimi17g02321
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:84119264 Mimi17g02321 Mimi-Chr17:81715987 wgd