AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02148 ATGACGAAAACCATCGTGAAATACGCCGTCGTCGATGCATTTACAGACACGCCGTTCAAAGGAAATCCGGCAGCCGTGTGTTGGTTAGAGGATATCGAGAAAGATGACAAGTGGATGCAATCAGTTGCCGCTGAATTCAATATTTCTGAGACTTGTTATTTGACTCCTATTGTTGAACACGGTCAAGAAAACCCTAGATTTCGTCTCAGGTGGTTCACTCCTGTAGCTGAGGTGGAACTTTGTGGTCATGCAACTTTAGCAGCTTCCCACTTCCTTTTTCAGTCTGGATTGGTGAATTCTAGCACAATTGAATTTTCAACCCTTTCTGGAATTTTGACTGCCAAAAAAATCCCAGATCACGAGGTCAACGGCTCATCAAATGGTGAATCAAATGCCAGCTTCTACATCGAGTTAGATTTCCCTGTTGTGCCTGTTTCAGATTACAATGATCTTGAGGTTTCTGCAATTTCAGAAATATTGAATGGTGTTTCTATTGTTGATGTAAAGAAGAACACACTTGATGATATCTATGTGGTGCTTCCATCTGCAAAAGATGTTGCAGAATTTAAGCCGCAGTTTAGTAAAATCAAAGAATCCCCTGGCAGAGGGATTGTGATTACAGCAGCTGCTCCTACTGGCTCAGGGTTTGATTTTTACAGTCGCTTCTTCTGCCCAAAACTGGGAATAGATGAGGATCCTGTTTGTGGGAGTGCACATTGCGCCTTAGCAGCCTATTGGCATGAGAAATTGGGGAAATGTGATTTTGTTGCATATCAGGCGTCACCTAGAAGTGGGGTATTACATGTTCATCTCGATAAGGTGAATAAAAGAGTACTTCTTCGAGAGGCAACGGATGGCATGGTGACAACAAGAGCGATGGAGGCAACAATTAGTAGAGTGGTGACACAATGGTGCGAGTCTGTGGGATGGGTCCATCCATTATGGGTATGGTTAGGATTTGGGATACTCTTCATTGATCCAACTTCCAAATTGATGCTTGTGTTGGAAGATAGAAGTGGTTGTTTTGGTAGGTTCATCATTTTGTTTGCATCTGCATATTACATTTACACCCACATGGGTTGCTTTGTGACTTGTACCGTACAAGTTGGTTTCACACCATGGAAGCTTGATTTGTAA 1137 42.57 MTKTIVKYAVVDAFTDTPFKGNPAAVCWLEDIEKDDKWMQSVAAEFNISETCYLTPIVEHGQENPRFRLRWFTPVAEVELCGHATLAASHFLFQSGLVNSSTIEFSTLSGILTAKKIPDHEVNGSSNGESNASFYIELDFPVVPVSDYNDLEVSAISEILNGVSIVDVKKNTLDDIYVVLPSAKDVAEFKPQFSKIKESPGRGIVITAAAPTGSGFDFYSRFFCPKLGIDEDPVCGSAHCALAAYWHEKLGKCDFVAYQASPRSGVLHVHLDKVNKRVLLREATDGMVTTRAMEATISRVVTQWCESVGWVHPLWVWLGFGILFIDPTSKLMLVLEDRSGCFGRFIILFASAYYIYTHMGCFVTCTVQVGFTPWKLDL 378
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02148 378 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 8 141 - -
Mimi16g02148 378 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 142 281 - -
Mimi16g02148 378 SUPERFAMILY Diaminopimelate epimerase-like 7 280 - -
Mimi16g02148 378 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 281 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Mimi16g02148 378 Pfam Phenazine biosynthesis-like protein 11 279 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Mimi16g02148 378 NCBIfam PhzF family phenazine biosynthesis isomerase 8 250 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02148 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Mimi Mimi-Chr16:84177090 Mimi18g00449 Mimi-Chr18:9051502 dispersed