AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mimi16g02156 | ATGGGTAGGACGTGTGTAGAACTATCGAGACCATCTTCGTCATCGTCGTCATCTTCTCCGCTGCCGGTGACGACATCGACGTCGATTACCGAAACGGTGAACGGCGAGCATGATTTCAGGATCTCCGGTTATTCGCTGTCGAAGGGTATTGGAATTGGGAAGTATGTAGCGTCTGATACGTTTACGGTTGGTGGATATTCATGGGCGATTTACTTTTATCCCGATGGGAAGAGTTTGGAGGATAACGCGAATTATGTTTCGTTGTTCATTGCGTTGGCTAGCGATGGATCTGATGTTCGCGCGCTTTTTGAGTTAACCCTAATTGATCAAAGTGGGAATGAGAGGCACAAGATTCATAGCCATTTTGGAAGAGCACTGGAGAGCGGACCGTATACTCTGAAATACAGGGGTAGTATGTGGGGATACAAGCGGTTTTTCAAAAGATCTTCTTTAGAATCATCAGATTACTTGAAAGATGATTGCCTTCAAGTTCATTGCTGTGTTGGTGTGGTTAGGTCTCACACAGAGGGCCCTAAGTCCTACTCCATCCATGTGCCACCTTCGGATATTGGGCAGCATTTCGGGCAGCTTCTGGAATGTGGAAAAGGGACTGATGTGTCGTTTGAAGTAAATGGAGATACCTTTGCTGCCCATAAATTGGTTCTTGCTGCACGATCACCTGTTTTCAGGGCTCAACTTTTTGGTCCAATGAAAGATCAAAATGTCAAGTGTATCAAAGTTGAAGACATAGAAGCCCCTGTTTTTAAGGCACTACTTCATTTTATATACTGGGACAAACTACCAGACATGGAAGAGCTAACGGGTCTGAATACCAAATGGGCTTCAACTTTGATGTATCAGCATTTGCTTGCAGCTGCTGATCGGTATGGATTAGAAAGGCTTTGTATGCTATGTGAATCTAATCTCTGTGAAGATGTTGCCATTAATACCGTTGCAACAACATTAGCATTGGCTGAACAGCACCATTGTCTCCAGTTGAAATCTGTGTGCCTTAAATTCGTTGCTTTGCCTGAAAATCTCAGAGCTGTGATGCAGACAGACGGGTTTGACTACTTGAAAGAAAGCTGTCCTCACGTGTTAACAGAGCTACTGGAGCACGTGGCTAGAAACAACGAGCATTCTCTAGCCATATGTAGTCACCCAAATGCAATCATACTTGATGGAAGCGACGCTCATGGTAGAAGGTTGTTCTTCTCGTACTTTAAGGACCTGGTTGGACGAGAAGTGACAGTGGAACTGAAGAATGATTTAGCGATTCGAGGAACTCTTCATTCGGTCGACCAATATCTCAATATCAAGCTCGAGAACACTAGAGTCGTTGATCAAGAGAAATTTCCGCATATGCTTTCGGTGAGGAACTGTTTCATCAGAGGATCAGTTGTGAGATACGTGCAGCTACCACCAGATGGAGTTGACATCGAGCTGCTCCATGATGCCACTAGAAGAGAAGCTCGCGGTGGTTAG | 1485 | 44.85 | MGRTCVELSRPSSSSSSSSPLPVTTSTSITETVNGEHDFRISGYSLSKGIGIGKYVASDTFTVGGYSWAIYFYPDGKSLEDNANYVSLFIALASDGSDVRALFELTLIDQSGNERHKIHSHFGRALESGPYTLKYRGSMWGYKRFFKRSSLESSDYLKDDCLQVHCCVGVVRSHTEGPKSYSIHVPPSDIGQHFGQLLECGKGTDVSFEVNGDTFAAHKLVLAARSPVFRAQLFGPMKDQNVKCIKVEDIEAPVFKALLHFIYWDKLPDMEELTGLNTKWASTLMYQHLLAAADRYGLERLCMLCESNLCEDVAINTVATTLALAEQHHCLQLKSVCLKFVALPENLRAVMQTDGFDYLKESCPHVLTELLEHVARNNEHSLAICSHPNAIILDGSDAHGRRLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKFPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG | 494 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mimi16g02156 | 494 | PANTHER | BTB-POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 25 | 375 | IPR045005 | GO:0016567(InterPro) | |
| Mimi16g02156 | 494 | SUPERFAMILY | TRAF domain-like | 31 | 170 | - | - | |
| Mimi16g02156 | 494 | Pfam | LSM domain | 408 | 472 | IPR001163 | - | |
| Mimi16g02156 | 494 | Pfam | MATH domain | 37 | 168 | IPR002083 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | Pfam | BTB-POZ domain | 194 | 311 | IPR000210 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | CDD | MATH | 35 | 168 | IPR002083 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | ProSiteProfiles | BTB domain profile. | 204 | 271 | IPR000210 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | ProSiteProfiles | MATH-TRAF domain profile. | 34 | 168 | IPR002083 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | SUPERFAMILY | POZ domain | 181 | 311 | IPR011333 | - | |
| Mimi16g02156 | 494 | SUPERFAMILY | Sm-like ribonucleoproteins | 404 | 492 | IPR010920 | - | |
| Mimi16g02156 | 494 | FunFam | BTB-POZ and math domain 1 | 180 | 307 | - | - | |
| Mimi16g02156 | 494 | ProSiteProfiles | Sm domain profile. | 403 | 477 | IPR047575 | GO:0003723(InterPro) | |
| Mimi16g02156 | 494 | Gene3D | - | 397 | 493 | - | - | |
| Mimi16g02156 | 494 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 33 | 172 | IPR008974 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | SMART | Sm3 | 406 | 473 | IPR001163 | - | |
| Mimi16g02156 | 494 | SMART | BTB-4 | 204 | 313 | IPR000210 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | CDD | LSm2 | 403 | 491 | IPR016654 | GO:0006397(InterPro) | |
| Mimi16g02156 | 494 | CDD | BTB-POZ-BPM-plant | 190 | 310 | - | - | |
| Mimi16g02156 | 494 | Gene3D | Potassium Channel Kv1.1; Chain A | 180 | 308 | IPR011333 | - | |
| Mimi16g02156 | 494 | SMART | math-3 | 39 | 151 | IPR002083 | GO:0005515(InterPro) | |
| Mimi16g02156 | 494 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
| Mimi16g02156 | 494 | CDD | BACK-AtBPM-like | 310 | 372 | IPR034090 | - | |
| Mimi16g02156 | 494 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Mimi16g02156 | 494 | FunFam | U6 snRNA-associated Sm-like protein LSm2 | 402 | 494 | - | - | |
| Mimi16g02156 | 494 | Gene3D | - | 313 | 388 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mimi16g02156 | K10523 | speckle-type POZ protein | ||||
| Mimi16g02156 | K12621 | U6 snRNA-associated Sm-like protein LSm2 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 128792 | Mimi12g00532 | Mimi16g02156 | |
| 421298 | Mimi16g00540 | Mimi16g02156 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Mimi | Mimi-Chr16:84281802 | Mimi1g00992 | Mimi-Chr1:70681168 | dispersed | |
| Mimi | Mimi-Chr12:11070588 | Mimi16g02156 | Mimi-Chr16:84281802 | transposed | |
| Mimi | Mimi-Chr12:11541463 | Mimi16g02156 | Mimi-Chr16:84281802 | transposed | |
| Mimi | Mimi-Chr19:6834527 | Mimi16g02156 | Mimi-Chr16:84281802 | transposed | |
| Mimi | Mimi-Chr19:7555885 | Mimi16g02156 | Mimi-Chr16:84281802 | transposed | |
| Mimi | Mimi-Chr12:11063395 | Mimi16g02156 | Mimi-Chr16:84281802 | wgd | |
| Mimi | Mimi-Chr16:17527190 | Mimi16g02156 | Mimi-Chr16:84281802 | wgd |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Mimi | BTB | 1.3e-25 | CL0033 | TR | TRAF |